Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3516

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
3,951,839	+		Rv3515c	0.62	-0.2
3,951,840	-		Rv3515c	0.62	-0.4
3,951,953	+		Rv3515c	0.69	+1.6
3,951,953	+		Rv3515c	0.69	-0.7
3,951,962	+		Rv3515c	0.69	+0.5
3,951,962	+		Rv3515c	0.69	+0.8
3,951,962	+		Rv3515c	0.69	-0.2
3,951,963	-		Rv3515c	0.69	+0.3
3,951,963	-		Rv3515c	0.69	+0.1
3,952,093	+		Rv3515c	0.77	-0.1
3,952,093	+		Rv3515c	0.77	-0.4
3,952,093	+		Rv3515c	0.77	+0.0
3,952,094	-		Rv3515c	0.77	+0.3
3,952,094	-		Rv3515c	0.77	-0.6
3,952,185	-		Rv3515c	0.83	+0.0
3,952,290	-		Rv3515c	0.89	+0.1
3,952,290	-		Rv3515c	0.89	+0.5
3,952,356	+				+0.2
3,952,374	-				+0.6
3,952,453	-				-0.2
3,952,453	-				-0.1
3,952,797	-		Rv3516	0.32	-1.0
3,953,130	+		Rv3516	0.74	-0.2
3,953,503	+				+0.2
3,953,504	-				-0.6
3,953,527	+		Rv3517	0.11	-0.0
3,953,527	+		Rv3517	0.11	-0.2
3,953,527	+		Rv3517	0.11	+0.3
3,953,527	+		Rv3517	0.11	-1.8
3,953,527	+		Rv3517	0.11	-0.6
3,953,527	+		Rv3517	0.11	-0.0
3,953,527	+		Rv3517	0.11	+1.3
3,953,527	+		Rv3517	0.11	-0.3
3,953,528	-		Rv3517	0.12	-1.0
3,953,583	-		Rv3517	0.18	-0.5
3,953,677	+		Rv3517	0.29	+0.2
3,953,678	-		Rv3517	0.29	+0.5
3,953,678	-		Rv3517	0.29	-0.3
3,953,763	+		Rv3517	0.40	+0.2
3,953,764	-		Rv3517	0.40	-0.2
3,953,928	+		Rv3517	0.59	+0.5
3,954,046	+		Rv3517	0.73	+0.6