Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3119

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
3,485,092	+				-0.0
3,485,112	+				-1.6
3,485,112	+				+2.3
3,485,116	+				+0.9
3,485,116	+				-1.9
3,485,116	+				-2.9
3,485,116	+				-1.7
3,485,117	-				+0.1
3,485,145	+				-0.1
3,485,146	-				+0.5
3,485,165	+				+0.9
3,485,303	+		Rv3119	0.39	+0.7
3,485,485	+		Rv3119	0.80	-0.1
3,485,486	-		Rv3119	0.80	+0.1
3,485,566	+				-1.1
3,485,675	+		Rv3120	0.17	+0.7
3,485,925	-		Rv3120	0.59	-0.6
3,485,937	-		Rv3120	0.61	+0.7
3,485,937	-		Rv3120	0.61	+0.0
3,485,993	+		Rv3120	0.70	-0.4
3,485,994	-		Rv3120	0.70	-0.2
3,486,189	+				-0.5
3,486,189	+				+1.1