Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2127

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
2,387,679	-		Rv2126c	0.62	-0.9
2,387,911	+				-0.1
2,387,912	-				-1.0
2,388,321	+				-0.6
2,388,321	+				-0.3
2,388,321	+				-0.5
2,388,321	+				+0.7
2,388,322	-				-1.6
2,388,322	-				-0.7
2,388,358	-				-1.4
2,388,358	-				-0.9
2,388,358	-				-0.7
2,388,368	+				-0.4
2,388,368	+				-0.3
2,388,369	-				-0.4
2,388,372	+				-0.1
2,388,373	-				+0.0
2,388,425	-				-1.2
2,388,437	+				-0.5
2,388,438	-				-0.6
2,388,500	+				+0.2
2,388,579	+				-1.3
2,388,664	+				-1.0
2,388,665	-				-1.4
2,388,877	+		Rv2127	0.18	-0.5
2,388,877	+		Rv2127	0.18	-0.8
2,388,877	+		Rv2127	0.18	+0.1
2,388,877	+		Rv2127	0.18	+0.3
2,388,877	+		Rv2127	0.18	-0.4
2,388,878	-		Rv2127	0.18	-0.7
2,388,878	-		Rv2127	0.18	-1.4
2,388,878	-		Rv2127	0.18	-1.4
2,388,878	-		Rv2127	0.18	-1.5
2,388,878	-		Rv2127	0.18	-1.7
2,388,928	+		Rv2127	0.21	-1.4
2,388,928	+		Rv2127	0.21	-0.7
2,388,929	-		Rv2127	0.21	-0.9
2,388,929	-		Rv2127	0.21	-1.2
2,388,982	+		Rv2127	0.25	-1.3
2,388,983	-		Rv2127	0.25	-2.2
2,388,983	-		Rv2127	0.25	-1.1
2,388,983	-		Rv2127	0.25	-1.1
2,389,142	+		Rv2127	0.36	-0.5
2,389,264	-		Rv2127	0.44	-3.5
2,389,304	+		Rv2127	0.47	-0.7
2,389,304	+		Rv2127	0.47	-1.5
2,389,390	+		Rv2127	0.53	-0.3
2,389,391	-		Rv2127	0.53	-0.6
2,389,430	-		Rv2127	0.55	+0.3
2,389,430	-		Rv2127	0.55	-0.3
2,389,431	+		Rv2127	0.55	-0.5
2,389,438	+		Rv2127	0.56	-0.5
2,389,439	-		Rv2127	0.56	-1.3
2,389,439	-		Rv2127	0.56	-2.8
2,389,524	+		Rv2127	0.62	-1.5
2,389,558	+		Rv2127	0.64	-0.7
2,389,859	-		Rv2127	0.85	-1.5
2,389,902	+		Rv2127	0.87	-1.1
2,389,953	+				+0.2
2,389,953	+				-1.0
2,389,953	+				-1.1
2,389,954	-				-1.0
2,389,954	-				+0.2
2,389,984	+				-0.4
2,389,985	-				-0.7
2,389,992	-				-1.0
2,390,035	-				-0.5
2,390,129	+		Rv2128	0.22	-0.2
2,390,142	+		Rv2128	0.28	-0.5
2,390,143	-		Rv2128	0.28	-0.3
2,390,309	+				-0.7
2,390,333	+				+1.7
2,390,333	+				-1.0
2,390,423	-		Rv2129c	0.13	-0.9
2,390,610	+		Rv2129c	0.34	-0.4
2,390,732	+		Rv2129c	0.48	+0.2
2,390,785	+		Rv2129c	0.54	-0.3
2,390,785	+		Rv2129c	0.54	-0.1
2,390,786	-		Rv2129c	0.54	+0.2
2,390,789	+		Rv2129c	0.55	+0.4
2,390,789	+		Rv2129c	0.55	+0.4
2,390,789	+		Rv2129c	0.55	-0.4
2,390,790	-		Rv2129c	0.55	-0.0
2,390,790	-		Rv2129c	0.55	+0.2
2,391,022	+		Rv2129c	0.81	-0.3