Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1841c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
2,089,260	-		Rv1840c	0.83	-0.3
2,089,260	-		Rv1840c	0.83	-0.2
2,089,566	+				-0.3
2,089,566	+				-0.2
2,089,566	+				-1.8
2,089,567	-				-0.3
2,089,567	-				-1.1
2,089,643	-				+0.4
2,089,775	-				-0.4
2,089,928	+		Rv1841c	0.24	+0.1
2,089,929	-		Rv1841c	0.24	-0.2
2,090,239	+		Rv1841c	0.54	-0.0
2,090,294	+		Rv1841c	0.59	+1.5
2,090,295	-		Rv1841c	0.59	+2.3
2,090,303	+		Rv1841c	0.60	-0.3
2,090,304	-		Rv1841c	0.60	+0.1
2,090,461	+		Rv1841c	0.75	+0.6
2,090,462	-		Rv1841c	0.75	+2.0
2,090,462	-		Rv1841c	0.75	-2.1
2,090,462	-		Rv1841c	0.75	-0.6
2,090,715	-				-0.5
2,090,932	+		Rv1842c	0.16	-0.1
2,090,932	+		Rv1842c	0.16	-0.2
2,090,933	-		Rv1842c	0.16	+0.6
2,090,986	-		Rv1842c	0.20	-0.2
2,090,986	-		Rv1842c	0.20	+1.0
2,091,096	+		Rv1842c	0.28	+0.5
2,091,096	+		Rv1842c	0.28	-0.1
2,091,096	+		Rv1842c	0.28	+0.5
2,091,229	-		Rv1842c	0.37	-0.3
2,091,506	+		Rv1842c	0.58	+0.7
2,091,506	+		Rv1842c	0.58	-1.3
2,091,507	-		Rv1842c	0.58	-0.4
2,091,700	+		Rv1842c	0.72	-0.1
2,091,700	+		Rv1842c	0.72	-0.1
2,091,700	+		Rv1842c	0.72	-0.9
2,091,701	-		Rv1842c	0.72	-0.3