Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1237

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,379,066	-		Rv1236	0.15	-0.4
1,379,079	+		Rv1236	0.16	+0.7
1,379,140	+		Rv1236	0.23	-0.5
1,379,140	+		Rv1236	0.23	-0.1
1,379,140	+		Rv1236	0.23	-0.6
1,379,141	-		Rv1236	0.23	-0.1
1,379,141	-		Rv1236	0.23	-0.1
1,379,165	-		Rv1236	0.26	-1.6
1,379,335	+		Rv1236	0.44	+0.1
1,379,337	+		Rv1236	0.44	-0.9
1,379,338	-		Rv1236	0.44	-0.3
1,379,338	-		Rv1236	0.44	-0.3
1,379,348	-		Rv1236	0.46	-1.9
1,379,348	-		Rv1236	0.46	+0.6
1,379,473	-		Rv1236	0.59	-0.1
1,379,656	+		Rv1236	0.79	+0.3
1,379,657	-		Rv1236	0.79	-0.6
1,379,657	-		Rv1236	0.79	-0.4
1,379,657	-		Rv1236	0.79	-0.3
1,380,011	+		Rv1237	0.19	-1.4
1,380,011	+		Rv1237	0.19	-0.8
1,380,011	+		Rv1237	0.19	-0.1
1,380,012	-		Rv1237	0.19	-0.2
1,380,305	+		Rv1237	0.55	-2.0
1,380,306	-		Rv1237	0.55	+0.1
1,380,827	+		Rv1238	0.12	-0.9
1,380,937	-		Rv1238	0.21	-0.3
1,380,953	+		Rv1238	0.23	+1.3
1,381,252	-		Rv1238	0.48	-0.7
1,381,300	+		Rv1238	0.52	-0.2
1,381,569	+		Rv1238	0.75	-0.0
1,381,644	+		Rv1238	0.81	-0.1