Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1218c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,361,531	-		Rv1217c	0.84	-0.0
1,361,570	+		Rv1217c	0.86	-0.5
1,361,635	+		Rv1217c	0.90	+0.2
1,361,704	+				-1.0
1,361,847	+				+1.3
1,362,078	-		Rv1218c	0.30	+1.1
1,362,328	-		Rv1218c	0.57	-0.3
1,362,567	-		Rv1218c	0.82	+0.0
1,362,772	+				-1.0
1,362,772	+				+0.1
1,362,773	-				+0.3
1,362,773	-				-0.5
1,362,805	+		Rv1219c	0.13	+0.3
1,362,806	-		Rv1219c	0.13	+0.1
1,362,842	-		Rv1219c	0.19	-0.3
1,362,978	+		Rv1219c	0.40	+0.0
1,363,072	+		Rv1219c	0.55	+0.4
1,363,073	-		Rv1219c	0.55	-1.2
1,363,073	-		Rv1219c	0.55	+0.7
1,363,073	-		Rv1219c	0.55	-0.6
1,363,090	+		Rv1219c	0.57	-0.2
1,363,091	-		Rv1219c	0.58	-0.4
1,363,380	-				+0.1
1,363,505	-				-1.1
1,363,711	+		Rv1220c	0.32	-1.0
1,363,711	+		Rv1220c	0.32	-1.2
1,363,712	-		Rv1220c	0.32	-0.8
1,363,712	-		Rv1220c	0.32	-0.6