Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1216c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,358,507	+		Rv1215c	0.44	-0.3
1,358,540	+		Rv1215c	0.46	-0.5
1,358,540	+		Rv1215c	0.46	-0.1
1,358,541	-		Rv1215c	0.46	-0.1
1,358,723	+		Rv1215c	0.57	-0.8
1,358,723	+		Rv1215c	0.57	-0.2
1,358,724	-		Rv1215c	0.57	-0.1
1,358,901	-		Rv1215c	0.68	+0.1
1,358,901	-		Rv1215c	0.68	-0.1
1,358,901	-		Rv1215c	0.68	-1.0
1,359,147	-		Rv1215c	0.82	-0.3
1,359,457	-				-1.3
1,359,457	-				-0.0
1,359,483	-				+0.9
1,359,515	+				+0.5
1,359,638	-		Rv1216c	0.25	+0.4
1,359,668	+		Rv1216c	0.29	-1.5
1,359,669	-		Rv1216c	0.29	+0.2
1,359,693	-		Rv1216c	0.33	+0.1
1,359,693	-		Rv1216c	0.33	-1.2
1,359,693	-		Rv1216c	0.33	+0.4
1,359,712	+		Rv1216c	0.36	-0.4
1,359,713	-		Rv1216c	0.36	+0.4
1,359,749	+		Rv1216c	0.41	+1.5
1,359,750	-		Rv1216c	0.41	-0.1
1,359,849	-		Rv1216c	0.56	+0.3
1,359,995	+		Rv1216c	0.77	+0.1
1,359,996	-		Rv1216c	0.78	-0.2
1,360,121	-				-0.8
1,360,126	+				+0.8
1,360,126	+				-0.9
1,360,157	-				-0.4
1,360,336	+		Rv1217c	0.11	-0.6
1,360,423	-		Rv1217c	0.16	+1.2
1,360,507	+		Rv1217c	0.21	-0.5
1,360,508	-		Rv1217c	0.21	-0.4
1,360,659	+		Rv1217c	0.31	-0.5