Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0696

Experiment: casaminos 1 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv0694 and Rv0695 are separated by 189 nucleotidesRv0695 and Rv0696 are separated by 48 nucleotidesRv0696 and Rv0697 are separated by 1 nucleotides Rv0694: Rv0694 - Possible L-lactate dehydrogenase (cytochrome) LldD1, at 793,335 to 794,525 Rv0694 Rv0695: Rv0695 - Conserved hypothetical protein, at 794,715 to 795,470 Rv0695 Rv0696: Rv0696 - Probable membrane sugar transferase, at 795,519 to 796,931 Rv0696 Rv0697: Rv0697 - Probable dehydrogenase, at 796,933 to 798,372 Rv0697 Position (kb) 795 796 797Strain fitness (log2 ratio) -1 0 1at 794.696 kb on - strandat 794.783 kb on - strandat 794.852 kb on - strand, within Rv0695at 794.852 kb on - strand, within Rv0695at 795.130 kb on + strand, within Rv0695at 795.782 kb on - strand, within Rv0696at 796.191 kb on - strand, within Rv0696

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C)
remove
794,696 - -0.5
794,783 - -1.3
794,852 - Rv0695 0.18 -0.7
794,852 - Rv0695 0.18 -0.3
795,130 + Rv0695 0.55 -0.7
795,782 - Rv0696 0.19 -0.5
796,191 - Rv0696 0.48 -1.7

Or see this region's nucleotide sequence