Experiment: casaminos 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0134 and Rv0135c overlap by 30 nucleotides Rv0135c and Rv0136 are separated by 116 nucleotides Rv0136 and Rv0137c are separated by 20 nucleotides Rv0137c and Rv0138 are separated by 62 nucleotides
Rv0134: Rv0134 - Possible epoxide hydrolase EphF (epoxide hydratase) (arene-oxide hydratase), at 161,771 to 162,673
Rv0134
Rv0135c: Rv0135c - Possible transcriptional regulatory protein, at 162,644 to 163,249
Rv0135c
Rv0136: Rv0136 - Probable cytochrome P450 138 Cyp138, at 163,366 to 164,691
Rv0136
Rv0137c: Rv0137c - Probable peptide methionine sulfoxide reductase MsrA (protein-methionine-S-oxide reductase) (peptide met(O) reductase), at 164,712 to 165,260
Rv0137c
Rv0138: Rv0138 - Conserved hypothetical protein, at 165,323 to 165,826
Rv0138
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 162.645 kb on + strand at 162.645 kb on + strand at 162.645 kb on + strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.792 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.954 kb on + strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.263 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.534 kb on + strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.695 kb on - strand, within Rv0136 at 163.732 kb on + strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.821 kb on + strand, within Rv0136 at 163.821 kb on + strand, within Rv0136 at 163.822 kb on - strand, within Rv0136 at 163.822 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.954 kb on + strand, within Rv0136 at 164.072 kb on + strand, within Rv0136 at 164.298 kb on - strand, within Rv0136 at 164.354 kb on - strand, within Rv0136 at 164.397 kb on + strand, within Rv0136 at 164.404 kb on - strand, within Rv0136 at 164.414 kb on + strand, within Rv0136 at 164.414 kb on + strand, within Rv0136 at 164.414 kb on + strand, within Rv0136 at 164.415 kb on - strand, within Rv0136 at 164.478 kb on + strand, within Rv0136 at 164.831 kb on - strand, within Rv0137c at 164.968 kb on + strand, within Rv0137c at 164.969 kb on - strand, within Rv0137c at 165.005 kb on + strand, within Rv0137c at 165.006 kb on - strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.160 kb on + strand, within Rv0137c at 165.161 kb on - strand, within Rv0137c at 165.282 kb on + strand at 165.283 kb on - strand at 165.283 kb on - strand at 165.283 kb on - strand at 165.303 kb on - strand at 165.303 kb on - strand at 165.434 kb on + strand, within Rv0138 at 165.434 kb on + strand, within Rv0138 at 165.435 kb on - strand, within Rv0138 at 165.435 kb on - strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.675 kb on - strand, within Rv0138 at 165.675 kb on - strand, within Rv0138 at 165.675 kb on - strand, within Rv0138
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C) remove 162,645 + +0.1 162,645 + +1.7 162,645 + +0.2 162,646 - -0.4 162,646 - +0.1 162,646 - -0.4 162,792 - Rv0135c 0.24 +0.2 162,846 - Rv0135c 0.33 +1.1 162,846 - Rv0135c 0.33 +0.8 162,954 + Rv0135c 0.51 -0.6 162,955 - Rv0135c 0.51 +0.0 162,955 - Rv0135c 0.51 +0.7 163,262 + -1.4 163,262 + -0.1 163,262 + +0.0 163,262 + -0.0 163,262 + +1.2 163,262 + +0.1 163,262 + -0.1 163,263 - -0.4 163,267 - +0.0 163,267 - -0.5 163,267 - +0.3 163,534 + Rv0136 0.13 -0.5 163,535 - Rv0136 0.13 -1.3 163,535 - Rv0136 0.13 -0.2 163,535 - Rv0136 0.13 -1.3 163,695 - Rv0136 0.25 -0.3 163,732 + Rv0136 0.28 -0.2 163,733 - Rv0136 0.28 -0.8 163,733 - Rv0136 0.28 +0.7 163,733 - Rv0136 0.28 +0.1 163,821 + Rv0136 0.34 -0.6 163,821 + Rv0136 0.34 -0.9 163,822 - Rv0136 0.34 +0.7 163,822 - Rv0136 0.34 -0.4 163,875 - Rv0136 0.38 -1.4 163,875 - Rv0136 0.38 -0.6 163,875 - Rv0136 0.38 -1.6 163,954 + Rv0136 0.44 +0.7 164,072 + Rv0136 0.53 -0.0 164,298 - Rv0136 0.70 -0.6 164,354 - Rv0136 0.75 +0.2 164,397 + Rv0136 0.78 +1.7 164,404 - Rv0136 0.78 +2.2 164,414 + Rv0136 0.79 -2.4 164,414 + Rv0136 0.79 +0.0 164,414 + Rv0136 0.79 -0.4 164,415 - Rv0136 0.79 -0.1 164,478 + Rv0136 0.84 +0.2 164,831 - Rv0137c 0.22 +0.6 164,968 + Rv0137c 0.47 +0.2 164,969 - Rv0137c 0.47 -0.6 165,005 + Rv0137c 0.53 +0.0 165,006 - Rv0137c 0.54 -0.5 165,130 + Rv0137c 0.76 +0.1 165,130 + Rv0137c 0.76 -0.5 165,130 + Rv0137c 0.76 +0.6 165,160 + Rv0137c 0.82 -0.3 165,161 - Rv0137c 0.82 -0.3 165,282 + -0.3 165,283 - +1.0 165,283 - -0.4 165,283 - -0.0 165,303 - +0.3 165,303 - +0.4 165,434 + Rv0138 0.22 +0.7 165,434 + Rv0138 0.22 -1.1 165,435 - Rv0138 0.22 -0.3 165,435 - Rv0138 0.22 +0.3 165,674 + Rv0138 0.70 -0.2 165,674 + Rv0138 0.70 -2.0 165,674 + Rv0138 0.70 -0.8 165,674 + Rv0138 0.70 -0.2 165,674 + Rv0138 0.70 -0.2 165,675 - Rv0138 0.70 +4.1 165,675 - Rv0138 0.70 +0.4 165,675 - Rv0138 0.70 +0.4
Or see this region's nucleotide sequence