Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3728

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
4,173,889	-		Rv3727	0.52	+0.9
4,173,933	+		Rv3727	0.54	-0.3
4,173,933	+		Rv3727	0.54	-0.3
4,173,933	+		Rv3727	0.54	-0.4
4,174,052	+		Rv3727	0.61	-0.1
4,174,211	+		Rv3727	0.69	+2.3
4,174,212	-		Rv3727	0.69	-1.1
4,174,212	-		Rv3727	0.69	+0.0
4,174,212	-		Rv3727	0.69	+0.4
4,174,260	-		Rv3727	0.72	+0.1
4,174,320	+		Rv3727	0.75	-0.1
4,174,404	-		Rv3727	0.80	-0.2
4,174,408	+		Rv3727	0.80	+0.0
4,174,461	-		Rv3727	0.83	-0.5
4,174,461	-		Rv3727	0.83	+0.1
4,174,488	+		Rv3727	0.85	-0.3
4,174,545	+		Rv3727	0.88	-0.1
4,174,761	+				-0.5
4,174,795	-				-0.6
4,174,835	-				+0.3
4,174,835	-				-0.0
4,174,910	+				+0.2
4,174,933	-				+0.5
4,174,965	+				-3.2
4,174,965	+				-0.2
4,174,965	+				-0.2
4,174,965	+				-0.6
4,174,966	-				-0.3
4,174,966	-				-0.1
4,174,966	-				-0.2
4,175,489	+		Rv3728	0.19	-0.5
4,175,803	+		Rv3728	0.29	-0.8
4,175,803	+		Rv3728	0.29	-0.4
4,175,803	+		Rv3728	0.29	-0.3
4,175,803	+		Rv3728	0.29	-0.2
4,175,804	-		Rv3728	0.29	-2.0
4,175,804	-		Rv3728	0.29	-0.4
4,175,804	-		Rv3728	0.29	-0.2
4,175,804	-		Rv3728	0.29	-0.4
4,175,804	-		Rv3728	0.29	-0.4
4,175,804	-		Rv3728	0.29	-1.0
4,175,804	-		Rv3728	0.29	-0.2
4,175,804	-		Rv3728	0.29	+0.3
4,175,809	+		Rv3728	0.29	-1.0
4,175,810	-		Rv3728	0.29	-0.7
4,175,839	+		Rv3728	0.30	+1.2
4,175,840	-		Rv3728	0.30	+1.4
4,175,840	-		Rv3728	0.30	-0.5
4,175,851	+		Rv3728	0.31	+1.9
4,176,001	+		Rv3728	0.35	+0.7
4,176,002	-		Rv3728	0.35	-0.4
4,176,002	-		Rv3728	0.35	-0.5
4,176,002	-		Rv3728	0.35	-0.1
4,176,059	+		Rv3728	0.37	-0.4
4,176,060	-		Rv3728	0.37	+0.6
4,176,139	+		Rv3728	0.40	-1.4
4,176,532	+		Rv3728	0.52	-0.6
4,176,532	+		Rv3728	0.52	-0.7
4,176,532	+		Rv3728	0.52	-0.1
4,176,532	+		Rv3728	0.52	-0.1
4,176,533	-		Rv3728	0.52	-1.3
4,176,568	+		Rv3728	0.53	-0.5
4,176,568	+		Rv3728	0.53	-0.6
4,176,569	-		Rv3728	0.53	-0.1
4,176,794	+		Rv3728	0.60	+0.8
4,176,936	-		Rv3728	0.65	-0.3
4,177,289	+		Rv3728	0.76	-0.2
4,177,456	+		Rv3728	0.81	-0.4
4,177,456	+		Rv3728	0.81	-0.8
4,177,457	-		Rv3728	0.81	-0.1
4,177,542	-		Rv3728	0.83	-0.3
4,177,542	-		Rv3728	0.83	-0.3
4,177,542	-		Rv3728	0.83	-0.2
4,177,610	+		Rv3728	0.86	+1.9
4,177,610	+		Rv3728	0.86	+0.7
4,177,611	-		Rv3728	0.86	+0.0
4,177,984	+				-0.5
4,178,213	+				-0.2
4,178,298	-				-0.5
4,178,369	+				+0.6
4,178,369	+				-0.3
4,178,369	+				-0.2
4,178,370	-				+0.0
4,178,417	+				-0.3
4,178,436	-				-0.3
4,178,436	-				-0.2
4,178,888	+		Rv3729	0.26	-0.4
4,178,888	+		Rv3729	0.26	+0.1
4,178,888	+		Rv3729	0.26	+0.7
4,178,888	+		Rv3729	0.26	-0.3
4,178,955	+		Rv3729	0.29	+1.0
4,178,955	+		Rv3729	0.29	-0.1
4,178,955	+		Rv3729	0.29	+0.3
4,178,956	-		Rv3729	0.29	-0.3