Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3066

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
3,429,769	-				+0.2
3,429,769	-				-0.0
3,429,769	-				+0.2
3,429,769	-				-0.4
3,429,770	+				-0.6
3,429,827	-				-0.1
3,429,859	+				-0.5
3,429,860	-				+0.0
3,429,964	+		Rv3064c	0.33	+0.8
3,429,964	+		Rv3064c	0.33	-0.1
3,429,965	-		Rv3064c	0.33	-0.4
3,429,985	+		Rv3064c	0.38	+0.3
3,430,084	+		Rv3064c	0.61	-0.8
3,430,085	-		Rv3064c	0.61	-1.4
3,430,085	-		Rv3064c	0.61	+0.0
3,430,085	-		Rv3064c	0.61	+0.4
3,430,181	-		Rv3064c	0.84	-0.7
3,430,181	-		Rv3064c	0.84	-1.1
3,430,181	-		Rv3064c	0.84	-0.5
3,430,182	+		Rv3064c	0.84	-0.7
3,430,182	+		Rv3064c	0.84	-0.2
3,430,183	-		Rv3064c	0.84	-0.1
3,430,183	-		Rv3064c	0.84	-0.3
3,430,183	-		Rv3064c	0.84	+0.0
3,430,262	-				+0.6
3,430,393	+				-0.4
3,430,393	+				-0.0
3,430,393	+				-0.1
3,430,397	+				+0.8
3,430,397	+				-0.2
3,430,397	+				-0.8
3,430,397	+				+0.4
3,430,399	+				-0.7
3,430,400	-				-0.3
3,430,565	-		Rv3065	0.55	+1.4
3,430,565	-		Rv3065	0.55	+0.9
3,430,634	+		Rv3065	0.76	-0.7
3,430,635	-		Rv3065	0.77	+0.2
3,430,863	+		Rv3066	0.26	-1.2
3,430,864	-		Rv3066	0.26	-1.0
3,430,864	-		Rv3066	0.26	-2.1
3,430,866	+		Rv3066	0.26	-2.3
3,430,866	+		Rv3066	0.26	-1.4
3,431,049	+		Rv3066	0.56	-1.9
3,431,049	+		Rv3066	0.56	-2.2
3,431,049	+		Rv3066	0.56	-1.9
3,431,050	-		Rv3066	0.56	-1.7
3,431,050	-		Rv3066	0.56	-2.4
3,431,050	-		Rv3066	0.56	-2.8
3,431,180	+		Rv3066	0.78	-1.8
3,431,181	-		Rv3066	0.78	-1.0
3,431,371	+				-0.8
3,431,372	-				-0.5
3,431,378	+				-0.5
3,431,389	+				+0.2
3,431,390	-				+0.3
3,431,390	-				+1.8
3,431,540	+		Rv3067	0.27	+0.9
3,431,739	+		Rv3067	0.76	-0.0
3,431,740	-		Rv3067	0.76	-0.7
3,431,797	+		Rv3067	0.90	-0.2
3,431,810	-				-0.7
3,432,061	+				-0.2
3,432,061	+				-0.5
3,432,070	+				+1.0
3,432,070	+				+1.0
3,432,071	-				-0.2
3,432,071	-				+0.1
3,432,280	+		Rv3068c	0.18	+0.1
3,432,280	+		Rv3068c	0.18	-0.0
3,432,281	-		Rv3068c	0.18	-0.8