Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3034c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
3,393,793	-		Rv3033	0.75	+0.1
3,394,769	+		Rv3034c	0.83	-0.1
3,394,769	+		Rv3034c	0.83	-0.3
3,394,769	+		Rv3034c	0.83	+0.6
3,394,769	+		Rv3034c	0.83	+0.8
3,394,770	-		Rv3034c	0.83	+1.2
3,394,770	-		Rv3034c	0.83	+0.2
3,394,774	+		Rv3034c	0.84	+1.4
3,394,774	+		Rv3034c	0.84	-0.1
3,394,775	-		Rv3034c	0.84	+0.3
3,394,775	-		Rv3034c	0.84	+0.6
3,394,775	-		Rv3034c	0.84	-0.4
3,394,929	-				-0.7
3,394,929	-				+0.1
3,394,929	-				-1.1
3,394,937	+				-0.1
3,394,938	-				-0.6
3,394,938	-				-0.5
3,394,938	-				+0.0
3,395,019	+				-0.5
3,395,019	+				-0.1
3,395,020	-				-2.9
3,395,047	+				+0.0
3,395,047	+				-0.1
3,395,100	+				+0.3
3,395,100	+				-0.5
3,395,100	+				-0.1