Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2530A

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
2,853,935	-		Rv2529	0.76	+0.3
2,854,908	-				-0.1
2,855,040	+				-0.9
2,855,122	+				-0.5
2,855,122	+				-0.7
2,855,122	+				-0.4
2,855,122	+				-0.2
2,855,162	-				+1.1
2,855,162	-				+0.2
2,855,241	+		Rv2531c	0.11	+0.0
2,855,314	+		Rv2531c	0.13	-0.3
2,855,323	+		Rv2531c	0.14	+1.1
2,855,400	+		Rv2531c	0.16	-0.3
2,855,445	+		Rv2531c	0.18	+0.3
2,855,524	+		Rv2531c	0.21	+0.1
2,855,525	-		Rv2531c	0.21	-0.1
2,855,580	-		Rv2531c	0.23	+0.3
2,855,755	+		Rv2531c	0.29	+0.3
2,855,756	-		Rv2531c	0.29	+0.0
2,855,878	+		Rv2531c	0.33	+0.4
2,855,878	+		Rv2531c	0.33	+0.0
2,855,878	+		Rv2531c	0.33	+0.1
2,855,879	-		Rv2531c	0.33	-0.0
2,855,879	-		Rv2531c	0.33	-0.3