Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2047c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
2,291,100	-				+1.3
2,291,190	+				-0.9
2,291,191	-				-0.4
2,291,340	-		Rv2046	0.11	-1.5
2,291,557	-		Rv2046	0.44	-0.4
2,291,726	-		Rv2046	0.70	-1.1
2,291,818	+		Rv2046	0.84	-1.3
2,291,957	+				-0.0
2,291,957	+				+0.7
2,291,957	+				-0.2
2,291,958	-				-0.5
2,292,082	-				-0.3
2,292,082	-				-2.6
2,292,183	-				-1.3
2,292,319	+		Rv2047c	0.14	-1.0
2,292,743	+		Rv2047c	0.30	-1.9
2,292,841	+		Rv2047c	0.34	-2.4
2,292,842	-		Rv2047c	0.34	-0.3
2,293,163	+		Rv2047c	0.47	+0.7
2,293,234	+		Rv2047c	0.50	-2.6
2,293,243	+		Rv2047c	0.50	-1.9
2,293,243	+		Rv2047c	0.50	-1.1
2,293,406	+		Rv2047c	0.56	-3.3
2,293,897	+		Rv2047c	0.75	-1.6
2,293,914	+		Rv2047c	0.76	-1.1
2,293,983	+		Rv2047c	0.79	-1.2
2,294,078	+		Rv2047c	0.82	-1.1
2,294,078	+		Rv2047c	0.82	-1.8
2,294,724	-				+0.1
2,294,793	+				-1.8