Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1539

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,741,270	-				+0.1
1,741,348	+		Rv1538c	0.14	-1.9
1,741,610	-		Rv1538c	0.41	-0.9
1,741,867	+		Rv1538c	0.67	+1.1
1,741,868	-		Rv1538c	0.67	-1.6
1,741,868	-		Rv1538c	0.67	-2.0
1,741,904	+		Rv1538c	0.71	-0.3
1,741,972	-		Rv1538c	0.77	-2.2
1,742,028	+		Rv1538c	0.83	-0.6
1,742,029	-		Rv1538c	0.83	-0.7
1,742,029	-		Rv1538c	0.83	+1.7
1,742,091	+		Rv1538c	0.90	-2.1
1,742,136	-				-1.8
1,742,797	+				-1.0
1,742,797	+				-0.6
1,742,797	+				+1.7
1,742,827	+				-1.4
1,742,827	+				+0.0
1,742,827	+				-0.1
1,742,827	+				-0.9
1,742,827	+				-0.4
1,743,845	+		Rv1541c	0.11	+0.7
1,743,846	-		Rv1541c	0.11	-0.1
1,743,846	-		Rv1541c	0.11	-1.3