Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1182

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,319,238	+		Rv1181	0.84	-0.1
1,319,399	-		Rv1181	0.88	+1.3
1,319,830	+				+0.7
1,320,191	-		Rv1182	0.11	-0.2
1,320,200	+		Rv1182	0.12	+0.0
1,320,325	+		Rv1182	0.20	+0.2
1,320,326	-		Rv1182	0.21	+1.0
1,320,347	+		Rv1182	0.22	+0.1
1,320,366	+		Rv1182	0.23	+0.1
1,320,367	-		Rv1182	0.23	+0.1
1,320,367	-		Rv1182	0.23	+0.6
1,320,606	-		Rv1182	0.40	+0.7
1,320,751	+		Rv1182	0.50	+1.5
1,320,907	-		Rv1182	0.61	-1.0
1,321,162	-		Rv1182	0.79	-0.0
1,321,268	+		Rv1182	0.87	+0.5
1,321,290	-		Rv1182	0.88	-1.0
1,321,304	+		Rv1182	0.89	+0.6
1,321,305	-		Rv1182	0.89	+0.6
1,321,305	-		Rv1182	0.89	+0.3
1,321,693	-				-0.6
1,321,810	+				+0.6
1,321,838	-		Rv1183	0.11	-0.2
1,321,840	+		Rv1183	0.11	-0.8
1,321,892	-		Rv1183	0.12	-0.2
1,321,914	-		Rv1183	0.13	-0.6
1,322,280	-		Rv1183	0.25	+0.2