Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1142c

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
1,268,542	+		Rv1141c	0.42	-0.6
1,268,576	-		Rv1141c	0.46	+0.7
1,268,608	-		Rv1141c	0.50	+0.1
1,268,620	+		Rv1141c	0.52	-0.6
1,268,716	+		Rv1141c	0.64	+0.7
1,268,784	+		Rv1141c	0.72	+1.4
1,268,784	+		Rv1141c	0.72	-0.3
1,268,785	-		Rv1141c	0.72	+2.3
1,268,785	-		Rv1141c	0.72	-0.0
1,268,984	-				-0.0
1,269,022	-				+0.9
1,269,022	-				-0.2
1,269,022	-				+0.1
1,269,050	-				-0.2
1,269,099	+				+0.1
1,269,100	-				-0.0
1,269,220	+				+0.3
1,269,387	+		Rv1142c	0.29	+1.1
1,269,454	+		Rv1142c	0.37	-0.2
1,269,455	-		Rv1142c	0.38	-0.0
1,269,455	-		Rv1142c	0.38	-0.6
1,269,569	+		Rv1142c	0.52	-0.9
1,269,569	+		Rv1142c	0.52	-0.6
1,269,647	+		Rv1142c	0.61	-0.5
1,269,648	-		Rv1142c	0.61	+0.0
1,269,648	-		Rv1142c	0.61	-1.2
1,269,948	+				-1.2
1,269,964	+				-0.7
1,270,005	+				-0.3
1,270,055	+				-0.3
1,270,056	-				-0.6
1,270,056	-				+0.2
1,270,193	+		Rv1143	0.12	+0.2
1,270,194	-		Rv1143	0.12	-0.7
1,270,217	+		Rv1143	0.14	+0.4
1,270,226	+		Rv1143	0.15	-0.1
1,270,383	+		Rv1143	0.30	+0.3
1,270,383	+		Rv1143	0.30	-0.1
1,270,421	+		Rv1143	0.33	-0.1
1,270,449	+		Rv1143	0.36	-1.1
1,270,449	+		Rv1143	0.36	+0.3
1,270,449	+		Rv1143	0.36	-0.5
1,270,450	-		Rv1143	0.36	-0.6
1,270,450	-		Rv1143	0.36	+0.0
1,270,450	-		Rv1143	0.36	+0.8
1,270,729	-		Rv1143	0.62	-0.6
1,270,729	-		Rv1143	0.62	+0.8
1,270,731	+		Rv1143	0.62	+0.4
1,270,731	+		Rv1143	0.62	-0.0
1,270,731	+		Rv1143	0.62	+0.1
1,270,731	+		Rv1143	0.62	-1.3
1,270,731	+		Rv1143	0.62	-0.1
1,270,732	-		Rv1143	0.62	+0.1
1,270,740	+		Rv1143	0.63	-0.5
1,270,740	+		Rv1143	0.63	+1.2
1,270,741	-		Rv1143	0.63	-0.6
1,270,741	-		Rv1143	0.63	-0.3
1,270,762	-		Rv1143	0.65	-0.8
1,270,762	-		Rv1143	0.65	-0.1
1,270,794	+		Rv1143	0.68	-0.6
1,270,794	+		Rv1143	0.68	-0.2
1,270,795	-		Rv1143	0.68	-0.4
1,270,822	+		Rv1143	0.70	-1.0