Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0886

Experiment: casaminos 1 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 1 mg/mL (C)
982,826	-				-1.0
982,826	-				-0.4
982,882	+		Rv0885	0.12	-0.7
983,093	-		Rv0885	0.32	+0.8
983,443	-		Rv0885	0.67	-1.1
983,492	-		Rv0885	0.71	-0.9
983,492	-		Rv0885	0.71	-0.8
983,790	+				+0.1
983,814	-				+0.4
983,920	+				-0.7
983,921	-				+2.5
983,923	-				-0.3
984,043	+		Rv0886	0.14	+1.8
984,044	-		Rv0886	0.14	-0.3
984,075	-		Rv0886	0.16	-0.7
984,075	-		Rv0886	0.16	-1.7
984,178	+		Rv0886	0.22	-0.6
984,178	+		Rv0886	0.22	-0.7
984,178	+		Rv0886	0.22	-1.1
984,179	-		Rv0886	0.22	-0.8
984,179	-		Rv0886	0.22	-0.1
984,179	-		Rv0886	0.22	-0.9
984,179	-		Rv0886	0.22	+0.5
984,308	+		Rv0886	0.29	-0.7
984,374	+		Rv0886	0.33	-1.5
984,374	+		Rv0886	0.33	-1.4
984,375	-		Rv0886	0.33	-0.9
985,157	-		Rv0886	0.78	+0.9
985,218	+		Rv0886	0.82	+0.6
985,219	-		Rv0886	0.82	-0.8
985,219	-		Rv0886	0.82	-0.9
985,810	-		Rv0887c	0.65	+1.8
985,899	-		Rv0887c	0.84	-1.5