Experiment: casaminos 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0724 and Rv0724A overlap by 4 nucleotides Rv0724A and Rv0725c overlap by 328 nucleotides Rv0725c and Rv0726c are separated by 92 nucleotides
Rv0724: Rv0724 - Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase), at 815,663 to 817,534
Rv0724
Rv0724A: Rv0724A - Conserved hypothetical protein, at 817,531 to 817,866
Rv0724A
Rv0725c: Rv0725c - Conserved hypothetical protein, at 817,539 to 818,444
Rv0725c
Rv0726c: Rv0726c - Possible S-adenosylmethionine-dependent methyltransferase, at 818,537 to 819,640
Rv0726c
Position (kb) 817
818
819 Strain fitness (log2 ratio) -1
0
1 at 816.798 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.151 kb on + strand, within Rv0724 at 817.323 kb on + strand, within Rv0724 at 817.352 kb on - strand at 817.622 kb on - strand at 817.700 kb on + strand at 817.701 kb on - strand at 817.880 kb on - strand, within Rv0725c at 817.975 kb on + strand, within Rv0725c at 818.171 kb on - strand, within Rv0725c at 818.256 kb on - strand, within Rv0725c at 818.453 kb on + strand at 818.453 kb on + strand at 818.686 kb on - strand, within Rv0726c at 818.686 kb on - strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.722 kb on - strand, within Rv0726c at 818.832 kb on + strand, within Rv0726c at 818.833 kb on - strand, within Rv0726c at 818.862 kb on + strand, within Rv0726c at 818.970 kb on - strand, within Rv0726c at 819.055 kb on - strand, within Rv0726c
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C) remove 816,798 + Rv0724 0.61 -0.3 817,151 + Rv0724 0.79 -0.4 817,151 + Rv0724 0.79 -0.1 817,151 + Rv0724 0.79 +1.2 817,323 + Rv0724 0.89 +0.3 817,352 - +0.2 817,622 - +1.4 817,700 + -0.6 817,701 - +0.4 817,880 - Rv0725c 0.38 +0.5 817,975 + Rv0725c 0.48 -0.2 818,171 - Rv0725c 0.70 -0.2 818,256 - Rv0725c 0.79 +0.7 818,453 + -0.2 818,453 + +1.0 818,686 - Rv0726c 0.13 -1.0 818,686 - Rv0726c 0.13 -0.7 818,721 + Rv0726c 0.17 -0.3 818,721 + Rv0726c 0.17 -0.9 818,722 - Rv0726c 0.17 -0.9 818,832 + Rv0726c 0.27 -0.5 818,833 - Rv0726c 0.27 -0.6 818,862 + Rv0726c 0.29 +0.0 818,970 - Rv0726c 0.39 -1.1 819,055 - Rv0726c 0.47 +0.5
Or see this region's nucleotide sequence