Experiment: casaminos 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0515 and Rv0516c overlap by 4 nucleotides Rv0516c and Rv0517 are separated by 210 nucleotides
Rv0515: Rv0515 - Conserved 13E12 repeat family protein, at 606,551 to 608,062
Rv0515
Rv0516c: Rv0516c - Possible anti-anti-sigma factor, at 608,059 to 608,535
Rv0516c
Rv0517: Rv0517 - Possible membrane acyltransferase, at 608,746 to 610,056
Rv0517
Position (kb) 608
609 Strain fitness (log2 ratio) -1
0
1
2 at 608.083 kb on + strand at 608.137 kb on - strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.197 kb on + strand, within Rv0516c at 608.227 kb on + strand, within Rv0516c at 608.228 kb on - strand, within Rv0516c at 608.439 kb on - strand, within Rv0516c at 608.462 kb on + strand, within Rv0516c at 608.463 kb on - strand, within Rv0516c at 608.463 kb on - strand, within Rv0516c at 608.613 kb on + strand at 608.613 kb on + strand at 608.704 kb on + strand at 608.704 kb on + strand at 608.705 kb on - strand at 608.746 kb on - strand at 608.746 kb on - strand at 608.782 kb on - strand at 608.894 kb on + strand, within Rv0517 at 608.895 kb on - strand, within Rv0517 at 608.987 kb on + strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 608.988 kb on - strand, within Rv0517 at 609.031 kb on + strand, within Rv0517 at 609.116 kb on - strand, within Rv0517 at 609.116 kb on - strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.316 kb on + strand, within Rv0517 at 609.317 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C) remove 608,083 + +0.3 608,137 - Rv0516c 0.16 -0.7 608,197 + Rv0516c 0.29 +1.3 608,197 + Rv0516c 0.29 -0.4 608,197 + Rv0516c 0.29 -0.1 608,197 + Rv0516c 0.29 -0.1 608,227 + Rv0516c 0.35 -0.4 608,228 - Rv0516c 0.35 -1.3 608,439 - Rv0516c 0.80 -1.0 608,462 + Rv0516c 0.84 -0.4 608,463 - Rv0516c 0.85 -0.7 608,463 - Rv0516c 0.85 -0.7 608,613 + -0.3 608,613 + +0.5 608,704 + +1.2 608,704 + -0.3 608,705 - +0.4 608,746 - +1.2 608,746 - -0.4 608,782 - -0.0 608,894 + Rv0517 0.11 -0.7 608,895 - Rv0517 0.11 -0.9 608,987 + Rv0517 0.18 -0.8 608,988 - Rv0517 0.18 +0.3 608,988 - Rv0517 0.18 +0.0 608,988 - Rv0517 0.18 -0.2 609,031 + Rv0517 0.22 -0.5 609,116 - Rv0517 0.28 -1.6 609,116 - Rv0517 0.28 +0.2 609,214 + Rv0517 0.36 +0.4 609,214 + Rv0517 0.36 -0.3 609,214 + Rv0517 0.36 +1.8 609,215 - Rv0517 0.36 -0.3 609,215 - Rv0517 0.36 +1.2 609,215 - Rv0517 0.36 +0.2 609,316 + Rv0517 0.43 +0.8 609,317 - Rv0517 0.44 -0.1 609,449 - Rv0517 0.54 -1.5 609,449 - Rv0517 0.54 -0.2 609,449 - Rv0517 0.54 +0.1 609,449 - Rv0517 0.54 -0.7 609,451 - Rv0517 0.54 +0.7 609,451 - Rv0517 0.54 -0.1 609,451 - Rv0517 0.54 +1.2 609,451 - Rv0517 0.54 -1.4
Or see this region's nucleotide sequence