Experiment: casaminos 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0359 and Rv0360c are separated by 4 nucleotides Rv0360c and Rv0361 are separated by 82 nucleotides Rv0361 and Rv0362 are separated by 221 nucleotides
Rv0359: Rv0359 - Probable conserved integral membrane protein, at 437,518 to 438,297
Rv0359
Rv0360c: Rv0360c - Conserved protein, at 438,302 to 438,739
Rv0360c
Rv0361: Rv0361 - Probable conserved membrane protein, at 438,822 to 439,649
Rv0361
Rv0362: Rv0362 - Possible Mg2+ transport transmembrane protein MgtE, at 439,871 to 441,253
Rv0362
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 437.863 kb on + strand, within Rv0359 at 437.863 kb on + strand, within Rv0359 at 437.863 kb on + strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.048 kb on - strand, within Rv0359 at 438.048 kb on - strand, within Rv0359 at 438.211 kb on + strand, within Rv0359 at 438.212 kb on - strand, within Rv0359 at 438.285 kb on + strand at 438.285 kb on + strand at 438.366 kb on + strand, within Rv0360c at 438.367 kb on - strand, within Rv0360c at 438.367 kb on - strand, within Rv0360c at 438.423 kb on - strand, within Rv0360c at 438.525 kb on + strand, within Rv0360c at 438.525 kb on + strand, within Rv0360c at 438.532 kb on - strand, within Rv0360c at 438.778 kb on + strand at 438.778 kb on + strand at 439.423 kb on - strand, within Rv0361 at 439.423 kb on - strand, within Rv0361 at 439.432 kb on - strand, within Rv0361 at 439.696 kb on + strand at 439.696 kb on + strand at 439.799 kb on + strand at 439.800 kb on - strand at 439.833 kb on - strand at 440.064 kb on + strand, within Rv0362 at 440.064 kb on + strand, within Rv0362 at 440.065 kb on - strand, within Rv0362 at 440.396 kb on + strand, within Rv0362 at 440.397 kb on - strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.605 kb on - strand, within Rv0362
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C) remove 437,863 + Rv0359 0.44 +0.1 437,863 + Rv0359 0.44 -0.6 437,863 + Rv0359 0.44 -0.3 437,864 - Rv0359 0.44 -1.0 437,864 - Rv0359 0.44 +0.2 437,864 - Rv0359 0.44 +0.8 437,864 - Rv0359 0.44 -0.6 437,864 - Rv0359 0.44 -0.8 438,018 - Rv0359 0.64 -0.6 438,018 - Rv0359 0.64 -0.5 438,018 - Rv0359 0.64 +0.0 438,048 - Rv0359 0.68 -0.6 438,048 - Rv0359 0.68 +0.2 438,211 + Rv0359 0.89 +2.0 438,212 - Rv0359 0.89 -0.4 438,285 + -0.0 438,285 + -1.0 438,366 + Rv0360c 0.15 -0.0 438,367 - Rv0360c 0.15 +0.3 438,367 - Rv0360c 0.15 +0.3 438,423 - Rv0360c 0.28 +0.2 438,525 + Rv0360c 0.51 -1.8 438,525 + Rv0360c 0.51 +0.0 438,532 - Rv0360c 0.53 -0.0 438,778 + -0.0 438,778 + +0.8 439,423 - Rv0361 0.73 -0.9 439,423 - Rv0361 0.73 -0.2 439,432 - Rv0361 0.74 -1.1 439,696 + +0.1 439,696 + +0.2 439,799 + +1.0 439,800 - -0.8 439,833 - -0.6 440,064 + Rv0362 0.14 -0.6 440,064 + Rv0362 0.14 +3.6 440,065 - Rv0362 0.14 -1.0 440,396 + Rv0362 0.38 +0.2 440,397 - Rv0362 0.38 -0.3 440,402 + Rv0362 0.38 +0.4 440,402 + Rv0362 0.38 -0.6 440,402 + Rv0362 0.38 +1.6 440,605 - Rv0362 0.53 -0.3
Or see this region's nucleotide sequence