Experiment: casaminos 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0127 and Rv0128 are separated by 67 nucleotides Rv0128 and Rv0129c are separated by 131 nucleotides Rv0129c and Rv0130 are separated by 246 nucleotides Rv0130 and Rv0131c are separated by 12 nucleotides
Rv0127: Rv0127 - Maltokinase Mak, at 154,232 to 155,599
Rv0127
Rv0128: Rv0128 - Probable conserved transmembrane protein, at 155,667 to 156,446
Rv0128
Rv0129c: Rv0129c - Secreted antigen 85-C FbpC (85C) (antigen 85 complex C) (AG58C) (mycolyl transferase 85C) (fibronectin-binding protein C), at 156,578 to 157,600
Rv0129c
Rv0130: Rv0130 - Probable 3-hydroxyl-thioester dehydratase, at 157,847 to 158,302
Rv0130
Rv0131c: Rv0131c - Probable acyl-CoA dehydrogenase FadE1, at 158,315 to 159,658
Rv0131c
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.622 kb on - strand at 155.622 kb on - strand at 155.682 kb on + strand at 155.683 kb on - strand at 155.683 kb on - strand at 155.683 kb on - strand at 155.766 kb on + strand, within Rv0128 at 155.774 kb on + strand, within Rv0128 at 155.774 kb on + strand, within Rv0128 at 155.775 kb on - strand, within Rv0128 at 155.775 kb on - strand, within Rv0128 at 155.962 kb on + strand, within Rv0128 at 155.984 kb on + strand, within Rv0128 at 155.985 kb on - strand, within Rv0128 at 155.985 kb on - strand, within Rv0128 at 156.089 kb on - strand, within Rv0128 at 156.106 kb on - strand, within Rv0128 at 156.106 kb on - strand, within Rv0128 at 156.106 kb on - strand, within Rv0128 at 156.106 kb on - strand, within Rv0128 at 156.215 kb on - strand, within Rv0128 at 156.239 kb on + strand, within Rv0128 at 156.239 kb on + strand, within Rv0128 at 156.239 kb on + strand, within Rv0128 at 156.239 kb on + strand, within Rv0128 at 156.240 kb on - strand, within Rv0128 at 156.243 kb on - strand, within Rv0128 at 156.243 kb on - strand, within Rv0128 at 156.243 kb on - strand, within Rv0128 at 156.308 kb on + strand, within Rv0128 at 156.308 kb on + strand, within Rv0128 at 156.308 kb on + strand, within Rv0128 at 156.308 kb on + strand, within Rv0128 at 156.309 kb on - strand, within Rv0128 at 156.312 kb on + strand, within Rv0128 at 156.706 kb on + strand, within Rv0129c at 156.739 kb on - strand, within Rv0129c at 156.797 kb on + strand, within Rv0129c at 156.798 kb on - strand, within Rv0129c at 156.949 kb on - strand, within Rv0129c at 157.035 kb on + strand, within Rv0129c at 157.222 kb on - strand, within Rv0129c at 157.234 kb on - strand, within Rv0129c at 157.288 kb on - strand, within Rv0129c at 157.327 kb on - strand, within Rv0129c at 157.435 kb on - strand, within Rv0129c at 157.435 kb on - strand, within Rv0129c at 157.525 kb on + strand at 157.600 kb on + strand at 157.601 kb on - strand at 157.604 kb on + strand at 157.607 kb on + strand at 157.818 kb on - strand at 157.823 kb on + strand at 157.824 kb on - strand at 158.079 kb on - strand, within Rv0130
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos 1 mg/mL (C) remove 155,622 - +0.0 155,622 - +1.0 155,682 + +0.7 155,683 - +2.4 155,683 - +0.2 155,683 - -0.7 155,766 + Rv0128 0.13 +0.5 155,774 + Rv0128 0.14 -0.3 155,774 + Rv0128 0.14 +1.3 155,775 - Rv0128 0.14 -0.8 155,775 - Rv0128 0.14 -0.3 155,962 + Rv0128 0.38 -0.4 155,984 + Rv0128 0.41 +0.7 155,985 - Rv0128 0.41 -0.4 155,985 - Rv0128 0.41 -0.6 156,089 - Rv0128 0.54 +0.1 156,106 - Rv0128 0.56 +0.8 156,106 - Rv0128 0.56 -0.5 156,106 - Rv0128 0.56 -0.7 156,106 - Rv0128 0.56 -0.5 156,215 - Rv0128 0.70 +0.2 156,239 + Rv0128 0.73 +0.0 156,239 + Rv0128 0.73 -0.6 156,239 + Rv0128 0.73 +0.9 156,239 + Rv0128 0.73 -1.1 156,240 - Rv0128 0.73 +0.6 156,243 - Rv0128 0.74 -0.7 156,243 - Rv0128 0.74 -1.1 156,243 - Rv0128 0.74 -0.8 156,308 + Rv0128 0.82 -0.2 156,308 + Rv0128 0.82 -0.2 156,308 + Rv0128 0.82 +0.9 156,308 + Rv0128 0.82 -0.4 156,309 - Rv0128 0.82 -0.7 156,312 + Rv0128 0.83 +1.2 156,706 + Rv0129c 0.13 -0.8 156,739 - Rv0129c 0.16 -1.5 156,797 + Rv0129c 0.21 +1.4 156,798 - Rv0129c 0.22 -2.6 156,949 - Rv0129c 0.36 +0.2 157,035 + Rv0129c 0.45 -0.2 157,222 - Rv0129c 0.63 -0.3 157,234 - Rv0129c 0.64 -1.0 157,288 - Rv0129c 0.69 -2.6 157,327 - Rv0129c 0.73 -0.9 157,435 - Rv0129c 0.84 -0.9 157,435 - Rv0129c 0.84 -0.1 157,525 + -0.3 157,600 + -1.3 157,601 - +0.0 157,604 + +0.9 157,607 + -0.2 157,818 - +0.8 157,823 + -0.2 157,824 - +0.1 158,079 - Rv0130 0.51 -0.6
Or see this region's nucleotide sequence