Experiment: D-Trehalose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0884c and Rv0885 are separated by 207 nucleotides Rv0885 and Rv0886 are separated by 18 nucleotides
Rv0884c: Rv0884c - Possible phosphoserine aminotransferase SerC (PSAT), at 981,424 to 982,554
Rv0884c
Rv0885: Rv0885 - Conserved hypothetical protein, at 982,762 to 983,784
Rv0885
Rv0886: Rv0886 - Probable NADPH:adrenodoxin oxidoreductase FprB (adrenodoxin reductase) (AR) (ferredoxin-NADP(+) reductase), at 983,803 to 985,530
Rv0886
Position (kb) 982
983
984 Strain fitness (log2 ratio) -1
0
1
2 at 982.565 kb on + strand at 982.672 kb on + strand at 982.779 kb on - strand at 982.826 kb on - strand at 982.826 kb on - strand at 982.882 kb on + strand, within Rv0885 at 983.093 kb on - strand, within Rv0885 at 983.443 kb on - strand, within Rv0885 at 983.492 kb on - strand, within Rv0885 at 983.492 kb on - strand, within Rv0885 at 983.790 kb on + strand at 983.814 kb on - strand at 983.920 kb on + strand at 983.921 kb on - strand at 983.923 kb on - strand at 984.043 kb on + strand, within Rv0886 at 984.044 kb on - strand, within Rv0886 at 984.044 kb on - strand, within Rv0886 at 984.075 kb on - strand, within Rv0886 at 984.075 kb on - strand, within Rv0886 at 984.178 kb on + strand, within Rv0886 at 984.178 kb on + strand, within Rv0886 at 984.178 kb on + strand, within Rv0886 at 984.179 kb on - strand, within Rv0886 at 984.179 kb on - strand, within Rv0886 at 984.179 kb on - strand, within Rv0886 at 984.179 kb on - strand, within Rv0886 at 984.308 kb on + strand, within Rv0886 at 984.374 kb on + strand, within Rv0886 at 984.374 kb on + strand, within Rv0886 at 984.375 kb on - strand, within Rv0886
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 10 mM (C) remove 982,565 + -0.4 982,672 + -0.1 982,779 - -1.3 982,826 - -1.1 982,826 - -1.0 982,882 + Rv0885 0.12 -0.8 983,093 - Rv0885 0.32 +0.9 983,443 - Rv0885 0.67 -0.8 983,492 - Rv0885 0.71 -0.1 983,492 - Rv0885 0.71 -1.1 983,790 + +0.5 983,814 - -0.1 983,920 + -0.9 983,921 - +0.3 983,923 - -0.4 984,043 + Rv0886 0.14 +1.9 984,044 - Rv0886 0.14 -1.2 984,044 - Rv0886 0.14 -0.1 984,075 - Rv0886 0.16 -1.3 984,075 - Rv0886 0.16 -1.1 984,178 + Rv0886 0.22 -0.7 984,178 + Rv0886 0.22 -0.7 984,178 + Rv0886 0.22 -0.5 984,179 - Rv0886 0.22 -0.8 984,179 - Rv0886 0.22 -0.3 984,179 - Rv0886 0.22 -1.0 984,179 - Rv0886 0.22 +2.1 984,308 + Rv0886 0.29 -1.2 984,374 + Rv0886 0.33 -0.6 984,374 + Rv0886 0.33 -0.8 984,375 - Rv0886 0.33 -1.0
Or see this region's nucleotide sequence