Experiment: D-Trehalose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0530 and Rv0530A overlap by 4 nucleotides Rv0530A and Rv0531 are separated by 46 nucleotides Rv0531 and Rv0532 are separated by 146 nucleotides Rv0532 and Rv0533c overlap by 105 nucleotides Rv0533c and Rv0534c are separated by 81 nucleotides
Rv0530: Rv0530 - Conserved protein, at 620,907 to 622,124
Rv0530
Rv0530A: Rv0530A - Conserved protein, at 622,121 to 622,282
Rv0530A
Rv0531: Rv0531 - Possible conserved membrane protein, at 622,329 to 622,646
Rv0531
Rv0532: Rv0532 - PE-PGRS family protein PE_PGRS6, at 622,793 to 624,577
Rv0532
Rv0533c: Rv0533c - 3-oxoacyl-[acyl-carrier-protein] synthase III FabH (beta-ketoacyl-ACP synthase III) (KAS III), at 624,473 to 625,480
Rv0533c
Rv0534c: Rv0534c - 1,4-dihydroxy-2-naphthoate octaprenyltransferase MenA (DHNA-octaprenyltransferase), at 625,562 to 626,440
Rv0534c
Position (kb) 622
623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2 at 622.122 kb on + strand at 622.122 kb on + strand at 622.123 kb on - strand at 622.132 kb on + strand at 622.132 kb on + strand at 622.133 kb on - strand at 622.239 kb on + strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.275 kb on + strand at 622.305 kb on - strand at 622.306 kb on + strand at 622.306 kb on + strand at 622.307 kb on - strand at 622.318 kb on - strand at 622.343 kb on + strand at 622.375 kb on + strand, within Rv0531 at 622.751 kb on + strand at 622.976 kb on + strand, within Rv0532 at 622.977 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532 at 623.202 kb on - strand, within Rv0532 at 623.441 kb on + strand, within Rv0532 at 623.441 kb on + strand, within Rv0532 at 623.671 kb on + strand, within Rv0532 at 623.672 kb on - strand, within Rv0532 at 623.862 kb on - strand, within Rv0532 at 623.862 kb on - strand, within Rv0532 at 624.453 kb on + strand at 624.507 kb on + strand at 624.508 kb on - strand at 624.575 kb on + strand at 624.632 kb on - strand, within Rv0533c at 624.697 kb on + strand, within Rv0533c at 624.726 kb on - strand, within Rv0533c at 624.726 kb on - strand, within Rv0533c at 624.885 kb on - strand, within Rv0533c at 625.005 kb on + strand, within Rv0533c at 625.005 kb on + strand, within Rv0533c at 625.006 kb on - strand, within Rv0533c at 625.006 kb on - strand, within Rv0533c at 625.006 kb on - strand, within Rv0533c at 625.006 kb on - strand, within Rv0533c at 625.013 kb on + strand, within Rv0533c at 625.013 kb on + strand, within Rv0533c at 625.014 kb on - strand, within Rv0533c at 625.014 kb on - strand, within Rv0533c at 625.102 kb on - strand, within Rv0533c at 625.142 kb on + strand, within Rv0533c at 625.350 kb on + strand, within Rv0533c at 625.385 kb on + strand at 625.385 kb on + strand at 625.385 kb on + strand at 625.386 kb on - strand at 625.419 kb on + strand at 625.481 kb on - strand at 625.489 kb on + strand at 625.489 kb on + strand at 625.490 kb on - strand at 625.490 kb on - strand at 625.490 kb on - strand at 625.563 kb on + strand at 625.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 10 mM (C) remove 622,122 + -0.4 622,122 + +2.2 622,123 - -0.7 622,132 + -0.4 622,132 + -1.1 622,133 - -0.2 622,239 + Rv0530A 0.73 -0.8 622,240 - Rv0530A 0.73 -0.7 622,240 - Rv0530A 0.73 -1.3 622,240 - Rv0530A 0.73 -0.4 622,240 - Rv0530A 0.73 -1.0 622,275 + +0.4 622,305 - +0.9 622,306 + -1.0 622,306 + -1.8 622,307 - -0.2 622,318 - -0.1 622,343 + -0.6 622,375 + Rv0531 0.14 -0.7 622,751 + +1.3 622,976 + Rv0532 0.10 -0.1 622,977 - Rv0532 0.10 +0.3 623,052 - Rv0532 0.15 +0.6 623,052 - Rv0532 0.15 +0.2 623,052 - Rv0532 0.15 -0.1 623,202 - Rv0532 0.23 +0.1 623,441 + Rv0532 0.36 +0.0 623,441 + Rv0532 0.36 +0.1 623,671 + Rv0532 0.49 +1.4 623,672 - Rv0532 0.49 +0.2 623,862 - Rv0532 0.60 -0.3 623,862 - Rv0532 0.60 -0.5 624,453 + -0.2 624,507 + -0.3 624,508 - -0.7 624,575 + -0.2 624,632 - Rv0533c 0.16 -0.4 624,697 + Rv0533c 0.22 -1.3 624,726 - Rv0533c 0.25 +0.1 624,726 - Rv0533c 0.25 +0.2 624,885 - Rv0533c 0.41 -0.7 625,005 + Rv0533c 0.53 -0.9 625,005 + Rv0533c 0.53 +0.3 625,006 - Rv0533c 0.53 -0.1 625,006 - Rv0533c 0.53 -0.7 625,006 - Rv0533c 0.53 +0.0 625,006 - Rv0533c 0.53 -0.1 625,013 + Rv0533c 0.54 -1.9 625,013 + Rv0533c 0.54 -0.4 625,014 - Rv0533c 0.54 -0.4 625,014 - Rv0533c 0.54 -0.3 625,102 - Rv0533c 0.62 +0.1 625,142 + Rv0533c 0.66 -0.4 625,350 + Rv0533c 0.87 +0.1 625,385 + +0.7 625,385 + -0.3 625,385 + +0.9 625,386 - -0.8 625,419 + +0.1 625,481 - +0.4 625,489 + -0.3 625,489 + -0.2 625,490 - +0.1 625,490 - -1.7 625,490 - -0.2 625,563 + -0.9 625,564 - -0.3
Or see this region's nucleotide sequence