Experiment: D-Trehalose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0519c and Rv0520 are separated by 180 nucleotides Rv0520 and Rv0521 overlap by 8 nucleotides Rv0521 and Rv0522 are separated by 134 nucleotides Rv0522 and Rv0523c overlap by 17 nucleotides Rv0523c and Rv0524 are separated by 113 nucleotides
Rv0519c: Rv0519c - Possible conserved membrane protein, at 611,172 to 612,074
Rv0519c
Rv0520: Rv0520 - Possible methyltransferase/methylase (fragment), at 612,255 to 612,605
Rv0520
Rv0521: Rv0521 - Possible methyltransferase/methylase (fragment), at 612,598 to 612,903
Rv0521
Rv0522: Rv0522 - Probable GABA permease GabP (4-amino butyrate transport carrier) (GAMA-aminobutyrate permease), at 613,038 to 614,342
Rv0522
Rv0523c: Rv0523c - Conserved protein, at 614,326 to 614,721
Rv0523c
Rv0524: Rv0524 - Probable glutamate-1-semialdehyde 2,1-aminomutase HemL (GSA) (glutamate-1-semialdehyde aminotransferase) (GSA-at), at 614,835 to 616,223
Rv0524
Position (kb) 613
614
615 Strain fitness (log2 ratio) -1
0
1
2 at 612.193 kb on - strand at 612.254 kb on + strand at 612.255 kb on - strand at 612.314 kb on + strand, within Rv0520 at 612.314 kb on + strand, within Rv0520 at 612.315 kb on - strand, within Rv0520 at 612.400 kb on - strand, within Rv0520 at 612.555 kb on + strand, within Rv0520 at 612.597 kb on + strand at 612.598 kb on - strand at 612.598 kb on - strand at 612.674 kb on - strand, within Rv0521 at 612.674 kb on - strand, within Rv0521 at 612.759 kb on - strand, within Rv0521 at 612.846 kb on - strand, within Rv0521 at 612.956 kb on - strand at 612.988 kb on + strand at 612.988 kb on + strand at 612.989 kb on - strand at 612.993 kb on - strand at 613.047 kb on - strand at 613.128 kb on + strand at 613.219 kb on - strand, within Rv0522 at 613.269 kb on + strand, within Rv0522 at 613.627 kb on + strand, within Rv0522 at 613.785 kb on + strand, within Rv0522 at 613.811 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 614.156 kb on - strand, within Rv0522 at 614.295 kb on + strand at 614.296 kb on - strand at 614.296 kb on - strand at 614.348 kb on - strand at 614.402 kb on + strand, within Rv0523c at 614.403 kb on - strand, within Rv0523c at 614.684 kb on + strand at 614.685 kb on - strand at 614.685 kb on - strand at 614.713 kb on + strand at 614.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 10 mM (C) remove 612,193 - +1.7 612,254 + -0.4 612,255 - +0.0 612,314 + Rv0520 0.17 +0.9 612,314 + Rv0520 0.17 -0.6 612,315 - Rv0520 0.17 +0.1 612,400 - Rv0520 0.41 -0.3 612,555 + Rv0520 0.85 -0.2 612,597 + +0.6 612,598 - +0.6 612,598 - -0.4 612,674 - Rv0521 0.25 +0.1 612,674 - Rv0521 0.25 +0.2 612,759 - Rv0521 0.53 +0.1 612,846 - Rv0521 0.81 -0.2 612,956 - -0.6 612,988 + -0.4 612,988 + -0.4 612,989 - -0.3 612,993 - -0.5 613,047 - -0.2 613,128 + -1.0 613,219 - Rv0522 0.14 +0.4 613,269 + Rv0522 0.18 -0.1 613,627 + Rv0522 0.45 +1.9 613,785 + Rv0522 0.57 -0.1 613,811 + Rv0522 0.59 +0.2 613,884 + Rv0522 0.65 +0.6 613,884 + Rv0522 0.65 +0.5 613,884 + Rv0522 0.65 +0.9 613,884 + Rv0522 0.65 +0.3 613,885 - Rv0522 0.65 -0.8 613,885 - Rv0522 0.65 -0.1 613,885 - Rv0522 0.65 -0.3 613,885 - Rv0522 0.65 -0.3 613,885 - Rv0522 0.65 -0.0 614,156 - Rv0522 0.86 -0.5 614,295 + +0.1 614,296 - +0.1 614,296 - -0.8 614,348 - +0.1 614,402 + Rv0523c 0.19 -0.5 614,403 - Rv0523c 0.19 -0.2 614,684 + +0.5 614,685 - -0.2 614,685 - -0.6 614,713 + -0.4 614,827 + -0.6
Or see this region's nucleotide sequence