Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2153c

Experiment: D-Trehalose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2152c and Rv2153c overlap by 4 nucleotidesRv2153c and Rv2154c overlap by 4 nucleotides Rv2152c: Rv2152c - Probable UDP-N-acetylmuramate-alanine ligase MurC, at 2,410,638 to 2,412,122 Rv2152c Rv2153c: Rv2153c - Probable UPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG, at 2,412,119 to 2,413,351 Rv2153c Rv2154c: Rv2154c - FtsW-like protein FtsW, at 2,413,348 to 2,414,922 Rv2154c Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1at 2413.607 kb on + strand, within Rv2154cat 2413.608 kb on - strand, within Rv2154c

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 10 mM (C)
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2,413,607 + Rv2154c 0.16 -0.9
2,413,608 - Rv2154c 0.17 -2.6

Or see this region's nucleotide sequence