Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0773c

Experiment: D-Trehalose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0772 and Rv0773c overlap by 4 nucleotidesRv0773c and Rv0774c are separated by 50 nucleotides Rv0772: Rv0772 - Probable phosphoribosylamine--glycine ligase PurD (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) (5'-phosphoribosylglycinamide synthetase), at 864,586 to 865,854 Rv0772 Rv0773c: Rv0773c - Probable bifunctional acylase GgtA: cephalosporin acylase (GL-7ACA acylase) + gamma-glutamyltranspeptidase (GGT), at 865,851 to 867,389 Rv0773c Rv0774c: Rv0774c - Probable conserved exported protein, at 867,440 to 868,351 Rv0774c Position (kb) 865 866 867 868Strain fitness (log2 ratio) -1 0 1at 866.332 kb on + strand, within Rv0773cat 866.333 kb on - strand, within Rv0773cat 866.609 kb on + strand, within Rv0773cat 867.483 kb on - strandat 868.384 kb on + strandat 868.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 10 mM (C)
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866,332 + Rv0773c 0.31 +0.8
866,333 - Rv0773c 0.31 +1.1
866,609 + Rv0773c 0.49 -0.3
867,483 - -0.2
868,384 + +0.4
868,385 - -0.1

Or see this region's nucleotide sequence