Experiment: D,L-Malic Acid 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0258c and Rv0259c are separated by 24 nucleotides Rv0259c and Rv0260c overlap by 4 nucleotides Rv0260c and Rv0261c are separated by 99 nucleotides
Rv0258c: Rv0258c - Conserved hypothetical protein, at 310,294 to 310,749
Rv0258c
Rv0259c: Rv0259c - Conserved hypothetical protein, at 310,774 to 311,517
Rv0259c
Rv0260c: Rv0260c - Possible transcriptional regulatory protein, at 311,514 to 312,659
Rv0260c
Rv0261c: Rv0261c - Probable integral membrane nitrite extrusion protein NarK3 (nitrite facilitator), at 312,759 to 314,168
Rv0261c
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 311.517 kb on + strand at 311.704 kb on - strand, within Rv0260c at 312.009 kb on + strand, within Rv0260c at 312.103 kb on - strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.227 kb on + strand, within Rv0260c at 312.659 kb on + strand at 312.660 kb on - strand at 312.835 kb on + strand at 312.868 kb on + strand at 312.869 kb on - strand at 313.245 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.291 kb on + strand, within Rv0261c at 313.451 kb on - strand, within Rv0261c at 313.541 kb on - strand, within Rv0261c at 313.582 kb on + strand, within Rv0261c at 313.583 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid 10 mM (C) remove 311,517 + -0.6 311,704 - Rv0260c 0.17 -0.4 312,009 + Rv0260c 0.43 -0.1 312,103 - Rv0260c 0.51 +0.5 312,227 + Rv0260c 0.62 -0.2 312,227 + Rv0260c 0.62 -0.2 312,659 + +0.4 312,660 - -0.4 312,835 + -1.4 312,868 + +0.5 312,869 - +0.5 313,245 + Rv0261c 0.34 -1.6 313,291 + Rv0261c 0.38 +0.9 313,291 + Rv0261c 0.38 -0.1 313,451 - Rv0261c 0.49 -0.3 313,541 - Rv0261c 0.55 -1.9 313,582 + Rv0261c 0.58 -0.1 313,583 - Rv0261c 0.58 -0.1 313,585 - Rv0261c 0.59 +0.1 313,585 - Rv0261c 0.59 -0.4
Or see this region's nucleotide sequence