Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3268 and Rv3269 are separated by 124 nucleotides Rv3269 and Rv3270 are separated by 10 nucleotides Rv3270 and Rv3271c overlap by 4 nucleotides Rv3271c and Rv3272 are separated by 100 nucleotides
Rv3268: Rv3268 - Conserved hypothetical protein, at 3,649,420 to 3,650,109
Rv3268
Rv3269: Rv3269 - Conserved protein, at 3,650,234 to 3,650,515
Rv3269
Rv3270: Rv3270 - Probable metal cation-transporting P-type ATPase C CtpC, at 3,650,526 to 3,652,682
Rv3270
Rv3271c: Rv3271c - Probable conserved integral membrane protein, at 3,652,679 to 3,653,347
Rv3271c
Rv3272: Rv3272 - Conserved hypothetical protein, at 3,653,448 to 3,654,632
Rv3272
Position (kb)
3650
3651
3652
3653 Strain fitness (log2 ratio)
-1
0
1
2 at 3649.583 kb on + strand, within Rv3268 at 3649.649 kb on + strand, within Rv3268 at 3649.810 kb on + strand, within Rv3268 at 3649.829 kb on + strand, within Rv3268 at 3649.844 kb on + strand, within Rv3268 at 3649.844 kb on + strand, within Rv3268 at 3649.845 kb on - strand, within Rv3268 at 3649.882 kb on - strand, within Rv3268 at 3650.147 kb on + strand at 3650.167 kb on + strand at 3650.241 kb on + strand at 3651.459 kb on - strand, within Rv3270 at 3651.807 kb on - strand, within Rv3270 at 3652.517 kb on - strand at 3652.530 kb on + strand at 3653.640 kb on + strand, within Rv3272
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 3,649,583 + Rv3268 0.24 -0.5 3,649,649 + Rv3268 0.33 +0.3 3,649,810 + Rv3268 0.57 +0.0 3,649,829 + Rv3268 0.59 +0.1 3,649,844 + Rv3268 0.61 -0.2 3,649,844 + Rv3268 0.61 -0.1 3,649,845 - Rv3268 0.62 +2.1 3,649,882 - Rv3268 0.67 -0.3 3,650,147 + -0.4 3,650,167 + -0.6 3,650,241 + +1.2 3,651,459 - Rv3270 0.43 -1.6 3,651,807 - Rv3270 0.59 -1.5 3,652,517 - -1.3 3,652,530 + -0.1 3,653,640 + Rv3272 0.16 -0.1
Or see this region's nucleotide sequence