Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2828c and Rv2828A overlap by 4 nucleotides Rv2828A and Rv2829c are separated by 20 nucleotides Rv2829c and Rv2830c overlap by 4 nucleotides Rv2830c and Rv2831 are separated by 46 nucleotides Rv2831 and Rv2832c are separated by 78 nucleotides
Rv2828c: Rv2828c - Conserved hypothetical protein, at 3,135,788 to 3,136,333
Rv2828c
Rv2828A: Rv2828A - Conserved hypothetical protein, at 3,136,330 to 3,136,599
Rv2828A
Rv2829c: Rv2829c - Possible toxin VapC22, at 3,136,620 to 3,137,012
Rv2829c
Rv2830c: Rv2830c - Possible antitoxin VapB22, at 3,137,009 to 3,137,224
Rv2830c
Rv2831: Rv2831 - Probable enoyl-CoA hydratase EchA16 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 3,137,271 to 3,138,020
Rv2831
Rv2832c: Rv2832c - Probable Sn-glycerol-3-phosphate transport ATP-binding protein ABC transporter UgpC, at 3,138,099 to 3,139,181
Rv2832c
Position (kb) 3137
3138
3139 Strain fitness (log2 ratio) -1
0
1 at 3136.521 kb on - strand, within Rv2828A at 3136.711 kb on + strand, within Rv2829c at 3136.712 kb on - strand, within Rv2829c at 3137.365 kb on + strand, within Rv2831 at 3137.593 kb on - strand, within Rv2831 at 3137.740 kb on - strand, within Rv2831
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 3,136,521 - Rv2828A 0.71 +1.1 3,136,711 + Rv2829c 0.23 -0.3 3,136,712 - Rv2829c 0.23 +0.1 3,137,365 + Rv2831 0.13 -0.6 3,137,593 - Rv2831 0.43 -1.2 3,137,740 - Rv2831 0.63 -0.4
Or see this region's nucleotide sequence