Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2826c

Experiment: L-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2824c and Rv2825c are separated by 177 nucleotidesRv2825c and Rv2826c are separated by 169 nucleotidesRv2826c and Rv2827c are separated by 2 nucleotides Rv2824c: Rv2824c - Hypothetical protein, at 3,131,770 to 3,132,714 Rv2824c Rv2825c: Rv2825c - Conserved hypothetical protein, at 3,132,892 to 3,133,539 Rv2825c Rv2826c: Rv2826c - Hypothetical protein, at 3,133,709 to 3,134,593 Rv2826c Rv2827c: Rv2827c - Hypothetical protein, at 3,134,596 to 3,135,483 Rv2827c Position (kb) 3133 3134 3135Strain fitness (log2 ratio) -1 0 1 2at 3132.743 kb on + strandat 3134.429 kb on + strand, within Rv2826cat 3134.430 kb on - strand, within Rv2826cat 3134.461 kb on + strand, within Rv2826cat 3134.462 kb on - strand, within Rv2826cat 3134.493 kb on + strand, within Rv2826cat 3134.494 kb on - strand, within Rv2826cat 3134.494 kb on - strand, within Rv2826c

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C)
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3,132,743 + +0.1
3,134,429 + Rv2826c 0.81 +0.9
3,134,430 - Rv2826c 0.81 +1.9
3,134,461 + Rv2826c 0.85 -0.3
3,134,462 - Rv2826c 0.85 +0.6
3,134,493 + Rv2826c 0.89 +1.1
3,134,494 - Rv2826c 0.89 -0.3
3,134,494 - Rv2826c 0.89 -0.3

Or see this region's nucleotide sequence