Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2813

Experiment: L-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2812 and Rv2813 overlap by 4 nucleotides Rv2812: Rv2812 - Probable transposase, at 3,116,818 to 3,118,227 Rv2812 Rv2813: Rv2813 - Conserved hypothetical protein, at 3,118,224 to 3,119,036 Rv2813 Position (kb) 3118 3119 3120Strain fitness (log2 ratio) -1 0 1 2 3 4at 3117.359 kb on - strand, within Rv2812at 3117.902 kb on - strand, within Rv2812at 3118.246 kb on - strandat 3118.639 kb on - strand, within Rv2813at 3118.828 kb on - strand, within Rv2813at 3119.317 kb on - strandat 3119.600 kb on - strandat 3119.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C)
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3,117,359 - Rv2812 0.38 +0.2
3,117,902 - Rv2812 0.77 -0.2
3,118,246 - +0.5
3,118,639 - Rv2813 0.51 -1.1
3,118,828 - Rv2813 0.74 -0.4
3,119,317 - +4.2
3,119,600 - +0.1
3,119,974 + +0.9

Or see this region's nucleotide sequence