Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1698

Experiment: L-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1697 and Rv1698 are separated by 21 nucleotidesRv1698 and Rv1699 are separated by 139 nucleotides Rv1697: Rv1697 - Conserved hypothetical protein, at 1,921,542 to 1,922,723 Rv1697 Rv1698: Rv1698 - Outer membrane protein MctB, at 1,922,745 to 1,923,689 Rv1698 Rv1699: Rv1699 - Probable CTP synthase PyrG, at 1,923,829 to 1,925,589 Rv1699 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -1 0 1at 1922.810 kb on - strandat 1922.810 kb on - strandat 1923.177 kb on - strand, within Rv1698at 1923.333 kb on + strand, within Rv1698at 1923.333 kb on + strand, within Rv1698at 1923.334 kb on - strand, within Rv1698at 1923.334 kb on - strand, within Rv1698at 1923.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C)
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1,922,810 - +0.2
1,922,810 - -0.7
1,923,177 - Rv1698 0.46 +0.0
1,923,333 + Rv1698 0.62 -0.3
1,923,333 + Rv1698 0.62 -0.5
1,923,334 - Rv1698 0.62 -0.6
1,923,334 - Rv1698 0.62 -1.2
1,923,646 - -0.9

Or see this region's nucleotide sequence