Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0912

Experiment: L-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0910 and Rv0911 are separated by 97 nucleotidesRv0911 and Rv0912 are separated by 64 nucleotidesRv0912 and Rv0913c are separated by 531 nucleotides Rv0910: Rv0910 - Conserved hypothetical protein, at 1,014,866 to 1,015,300 Rv0910 Rv0911: Rv0911 - Conserved protein, at 1,015,398 to 1,016,171 Rv0911 Rv0912: Rv0912 - Probable conserved transmembrane protein, at 1,016,236 to 1,016,685 Rv0912 Rv0913c: Rv0913c - Possible dioxygenase, at 1,017,217 to 1,018,725 Rv0913c Position (kb) 1016 1017Strain fitness (log2 ratio) -1 0 1at 1015.404 kb on - strandat 1015.409 kb on + strandat 1015.412 kb on + strandat 1015.482 kb on + strand, within Rv0911at 1015.528 kb on - strand, within Rv0911at 1015.537 kb on - strand, within Rv0911at 1015.623 kb on + strand, within Rv0911at 1015.623 kb on + strand, within Rv0911at 1015.623 kb on + strand, within Rv0911at 1015.706 kb on - strand, within Rv0911at 1016.015 kb on - strand, within Rv0911at 1016.015 kb on - strand, within Rv0911at 1016.221 kb on - strandat 1016.537 kb on - strand, within Rv0912at 1016.581 kb on + strand, within Rv0912at 1016.870 kb on + strandat 1017.377 kb on + strand, within Rv0913cat 1017.378 kb on - strand, within Rv0913cat 1017.476 kb on + strand, within Rv0913cat 1017.498 kb on - strand, within Rv0913cat 1017.679 kb on - strand, within Rv0913c

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C)
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1,015,404 - +0.8
1,015,409 + -0.3
1,015,412 + +1.7
1,015,482 + Rv0911 0.11 -1.3
1,015,528 - Rv0911 0.17 +0.2
1,015,537 - Rv0911 0.18 -0.5
1,015,623 + Rv0911 0.29 -1.3
1,015,623 + Rv0911 0.29 -0.3
1,015,623 + Rv0911 0.29 +0.5
1,015,706 - Rv0911 0.40 -0.0
1,016,015 - Rv0911 0.80 -0.4
1,016,015 - Rv0911 0.80 -0.7
1,016,221 - -0.1
1,016,537 - Rv0912 0.67 -1.3
1,016,581 + Rv0912 0.77 -0.5
1,016,870 + +1.0
1,017,377 + Rv0913c 0.11 -0.0
1,017,378 - Rv0913c 0.11 -1.0
1,017,476 + Rv0913c 0.17 -1.0
1,017,498 - Rv0913c 0.19 -0.5
1,017,679 - Rv0913c 0.31 +0.6

Or see this region's nucleotide sequence