Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0817c and Rv0818 are separated by 129 nucleotides Rv0818 and Rv0819 overlap by 4 nucleotides Rv0819 and Rv0820 are separated by 42 nucleotides Rv0820 and Rv0821c are separated by 55 nucleotides
Rv0817c: Rv0817c - Probable conserved exported protein, at 910,030 to 910,842
Rv0817c
Rv0818: Rv0818 - Transcriptional regulatory protein, at 910,972 to 911,739
Rv0818
Rv0819: Rv0819 - GCN5-related N-acetyltransferase, MshD, at 911,736 to 912,683
Rv0819
Rv0820: Rv0820 - Probable phosphate-transport ATP-binding protein ABC transporter PhoT, at 912,726 to 913,502
Rv0820
Rv0821c: Rv0821c - Probable phosphate-transport system transcriptional regulatory protein PhoY2, at 913,558 to 914,199
Rv0821c
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.895 kb on + strand at 910.901 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.982 kb on + strand at 910.983 kb on - strand at 910.983 kb on - strand at 910.983 kb on - strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.985 kb on + strand at 910.986 kb on - strand at 911.189 kb on + strand, within Rv0818 at 911.386 kb on + strand, within Rv0818 at 911.387 kb on - strand, within Rv0818 at 911.425 kb on + strand, within Rv0818 at 911.425 kb on + strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.426 kb on - strand, within Rv0818 at 911.449 kb on + strand, within Rv0818 at 911.450 kb on - strand, within Rv0818 at 911.512 kb on + strand, within Rv0818 at 911.513 kb on - strand, within Rv0818 at 911.620 kb on + strand, within Rv0818 at 911.620 kb on + strand, within Rv0818 at 911.700 kb on + strand at 911.700 kb on + strand at 911.700 kb on + strand at 911.700 kb on + strand at 912.161 kb on + strand, within Rv0819 at 912.205 kb on - strand, within Rv0819 at 912.442 kb on - strand, within Rv0819 at 912.442 kb on - strand, within Rv0819 at 912.579 kb on + strand, within Rv0819 at 912.580 kb on - strand, within Rv0819 at 912.580 kb on - strand, within Rv0819 at 912.640 kb on - strand at 912.640 kb on - strand at 912.678 kb on - strand at 912.723 kb on + strand at 912.723 kb on + strand at 912.724 kb on - strand at 912.763 kb on - strand at 912.765 kb on + strand at 912.766 kb on - strand at 912.942 kb on - strand, within Rv0820 at 912.942 kb on - strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 912.945 kb on + strand, within Rv0820 at 913.317 kb on + strand, within Rv0820 at 913.317 kb on + strand, within Rv0820 at 913.318 kb on - strand, within Rv0820 at 913.340 kb on + strand, within Rv0820 at 913.341 kb on - strand, within Rv0820 at 913.420 kb on + strand, within Rv0820 at 913.421 kb on - strand, within Rv0820 at 913.500 kb on + strand at 913.631 kb on + strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 910,895 + +0.2 910,901 + -1.1 910,982 + -0.9 910,982 + -0.1 910,982 + -0.2 910,982 + +0.0 910,983 - -1.1 910,983 - +0.2 910,983 - -1.6 910,985 + +1.0 910,985 + +1.5 910,985 + -0.2 910,985 + -0.7 910,985 + -0.0 910,986 - -0.7 911,189 + Rv0818 0.28 +0.1 911,386 + Rv0818 0.54 -0.1 911,387 - Rv0818 0.54 -1.5 911,425 + Rv0818 0.59 -1.2 911,425 + Rv0818 0.59 -1.1 911,426 - Rv0818 0.59 +0.4 911,426 - Rv0818 0.59 -1.6 911,426 - Rv0818 0.59 -1.2 911,449 + Rv0818 0.62 +1.9 911,450 - Rv0818 0.62 -1.6 911,512 + Rv0818 0.70 -0.4 911,513 - Rv0818 0.70 -0.8 911,620 + Rv0818 0.84 -0.4 911,620 + Rv0818 0.84 -0.1 911,700 + -0.1 911,700 + -0.1 911,700 + -0.7 911,700 + -0.7 912,161 + Rv0819 0.45 +0.5 912,205 - Rv0819 0.49 -1.9 912,442 - Rv0819 0.74 -1.3 912,442 - Rv0819 0.74 -1.3 912,579 + Rv0819 0.89 -1.3 912,580 - Rv0819 0.89 -0.3 912,580 - Rv0819 0.89 -0.2 912,640 - -2.1 912,640 - +0.9 912,678 - -3.3 912,723 + +1.1 912,723 + +0.1 912,724 - -2.5 912,763 - +0.3 912,765 + -2.6 912,766 - -1.7 912,942 - Rv0820 0.28 -0.7 912,942 - Rv0820 0.28 -0.5 912,945 + Rv0820 0.28 -1.5 912,945 + Rv0820 0.28 -0.4 912,945 + Rv0820 0.28 -1.3 913,317 + Rv0820 0.76 -2.3 913,317 + Rv0820 0.76 -1.3 913,318 - Rv0820 0.76 +0.1 913,340 + Rv0820 0.79 +0.4 913,341 - Rv0820 0.79 -1.2 913,420 + Rv0820 0.89 -1.8 913,421 - Rv0820 0.89 -1.9 913,500 + +0.4 913,631 + Rv0821c 0.11 -0.2 913,632 - Rv0821c 0.12 -0.6 913,632 - Rv0821c 0.12 -0.2
Or see this region's nucleotide sequence