Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0768 and Rv0769 are separated by 30 nucleotides Rv0769 and Rv0770 are separated by 97 nucleotides Rv0770 and Rv0771 overlap by 4 nucleotides
Rv0768: Rv0768 - Probable aldehyde dehydrogenase NAD dependent AldA (aldehyde dehydrogenase [NAD+]), at 860,912 to 862,381
Rv0768
Rv0769: Rv0769 - Probable dehydrogenase/reductase, at 862,412 to 863,158
Rv0769
Rv0770: Rv0770 - Probable dehydrogenase/reductase, at 863,256 to 864,143
Rv0770
Rv0771: Rv0771 - Possible 4-carboxymuconolactone decarboxylase (CMD), at 864,140 to 864,574
Rv0771
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1 at 861.951 kb on - strand, within Rv0768 at 861.951 kb on - strand, within Rv0768 at 862.661 kb on + strand, within Rv0769 at 862.662 kb on - strand, within Rv0769 at 862.777 kb on + strand, within Rv0769 at 862.791 kb on - strand, within Rv0769 at 862.938 kb on + strand, within Rv0769 at 862.938 kb on + strand, within Rv0769 at 863.289 kb on + strand at 863.291 kb on + strand at 863.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 861,951 - Rv0768 0.71 +0.3 861,951 - Rv0768 0.71 -0.2 862,661 + Rv0769 0.33 -2.1 862,662 - Rv0769 0.33 -0.5 862,777 + Rv0769 0.49 -0.9 862,791 - Rv0769 0.51 -0.1 862,938 + Rv0769 0.70 -0.2 862,938 + Rv0769 0.70 -0.5 863,289 + -0.0 863,291 + -0.4 863,291 + -0.4
Or see this region's nucleotide sequence