Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0670 and Rv0671 are separated by 31 nucleotides Rv0671 and Rv0672 are separated by 59 nucleotides Rv0672 and Rv0673 are separated by 10 nucleotides Rv0673 and Rv0674 are separated by 2 nucleotides
Rv0670: Rv0670 - Probable endonuclease IV End (endodeoxyribonuclease IV) (apurinase), at 769,792 to 770,550
Rv0670
Rv0671: Rv0671 - Possible conserved lipoprotein LpqP, at 770,582 to 771,424
Rv0671
Rv0672: Rv0672 - Probable acyl-CoA dehydrogenase FadE8, at 771,484 to 773,112
Rv0672
Rv0673: Rv0673 - Possible enoyl-CoA hydratase EchA4 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase), at 773,123 to 774,061
Rv0673
Rv0674: Rv0674 - Conserved hypothetical protein, at 774,064 to 774,786
Rv0674
Position (kb) 771
772
773
774 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 770.570 kb on + strand at 770.571 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.601 kb on + strand at 770.727 kb on - strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.813 kb on + strand, within Rv0671 at 771.005 kb on + strand, within Rv0671 at 771.492 kb on + strand at 771.493 kb on - strand at 771.532 kb on + strand at 771.533 kb on - strand at 771.533 kb on - strand at 771.533 kb on - strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.727 kb on + strand, within Rv0672 at 771.864 kb on + strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.886 kb on + strand, within Rv0672 at 771.887 kb on - strand, within Rv0672 at 771.912 kb on + strand, within Rv0672 at 771.912 kb on + strand, within Rv0672 at 771.913 kb on - strand, within Rv0672 at 772.091 kb on - strand, within Rv0672 at 772.622 kb on - strand, within Rv0672 at 772.688 kb on - strand, within Rv0672 at 772.688 kb on - strand, within Rv0672 at 773.174 kb on + strand at 773.399 kb on + strand, within Rv0673 at 773.415 kb on + strand, within Rv0673 at 773.445 kb on + strand, within Rv0673 at 773.446 kb on - strand, within Rv0673
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 770,570 + -0.1 770,571 - -1.5 770,582 - -0.9 770,582 - -0.3 770,582 - -0.4 770,582 - +0.4 770,601 + -0.9 770,727 - Rv0671 0.17 -0.6 770,728 + Rv0671 0.17 -0.6 770,728 + Rv0671 0.17 -0.1 770,729 - Rv0671 0.17 +0.8 770,729 - Rv0671 0.17 -1.2 770,729 - Rv0671 0.17 -2.5 770,813 + Rv0671 0.27 -0.5 771,005 + Rv0671 0.50 +3.2 771,492 + +0.4 771,493 - -1.2 771,532 + -0.4 771,533 - +0.3 771,533 - -0.5 771,533 - -0.4 771,605 + -0.5 771,605 + -0.3 771,605 + -0.8 771,605 + -1.8 771,727 + Rv0672 0.15 +0.2 771,864 + Rv0672 0.23 -1.2 771,865 - Rv0672 0.23 -0.1 771,865 - Rv0672 0.23 -1.4 771,865 - Rv0672 0.23 -0.9 771,886 + Rv0672 0.25 -0.8 771,887 - Rv0672 0.25 +0.2 771,912 + Rv0672 0.26 -0.2 771,912 + Rv0672 0.26 -0.9 771,913 - Rv0672 0.26 -0.4 772,091 - Rv0672 0.37 -0.9 772,622 - Rv0672 0.70 -1.5 772,688 - Rv0672 0.74 -0.8 772,688 - Rv0672 0.74 +0.7 773,174 + -0.2 773,399 + Rv0673 0.29 -0.8 773,415 + Rv0673 0.31 +0.3 773,445 + Rv0673 0.34 -0.0 773,446 - Rv0673 0.34 -0.2
Or see this region's nucleotide sequence