Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0555 and Rv0556 overlap by 4 nucleotides Rv0556 and Rv0557 are separated by 61 nucleotides Rv0557 and Rv0558 are separated by 16 nucleotides Rv0558 and Rv0559c are separated by 13 nucleotides
Rv0555: Rv0555 - Probable bifunctional menaquinone biosynthesis protein MenD : 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (SHCHC synthase) + 2-oxoglutarate decarboxylase (alpha-ketoglutarate decarboxylase) (KDC), at 646,298 to 647,962
Rv0555
Rv0556: Rv0556 - Probable conserved transmembrane protein, at 647,959 to 648,474
Rv0556
Rv0557: Rv0557 - Mannosyltransferase MgtA, at 648,536 to 649,672
Rv0557
Rv0558: Rv0558 - Probable ubiquinone/menaquinone biosynthesis methyltransferase MenH (2-heptaprenyl-1,4-naphthoquinone methyltransferase), at 649,689 to 650,393
Rv0558
Rv0559c: Rv0559c - Possible conserved secreted protein, at 650,407 to 650,745
Rv0559c
Position (kb) 648
649
650 Strain fitness (log2 ratio) -1
0
1 at 648.417 kb on - strand, within Rv0556 at 648.496 kb on - strand at 648.496 kb on - strand at 649.464 kb on + strand, within Rv0557 at 649.632 kb on - strand at 649.688 kb on + strand at 650.454 kb on - strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.544 kb on - strand, within Rv0559c at 650.607 kb on - strand, within Rv0559c at 650.621 kb on + strand, within Rv0559c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 648,417 - Rv0556 0.89 -0.1 648,496 - +0.3 648,496 - -0.4 649,464 + Rv0557 0.82 -0.6 649,632 - -0.1 649,688 + -1.2 650,454 - Rv0559c 0.14 -0.3 650,543 + Rv0559c 0.40 -0.5 650,543 + Rv0559c 0.40 -0.2 650,543 + Rv0559c 0.40 +0.6 650,544 - Rv0559c 0.40 +0.6 650,607 - Rv0559c 0.59 -1.0 650,621 + Rv0559c 0.63 -0.5
Or see this region's nucleotide sequence