Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0471c and Rv0472c are separated by 9 nucleotides Rv0472c and Rv0473 are separated by 136 nucleotides Rv0473 and Rv0474 are separated by 86 nucleotides Rv0474 and Rv0475 are separated by 353 nucleotides
Rv0471c: Rv0471c - Hypothetical protein, at 562,225 to 562,713
Rv0471c
Rv0472c: Rv0472c - Probable transcriptional regulatory protein (possibly TetR-family), at 562,723 to 563,427
Rv0472c
Rv0473: Rv0473 - Possible conserved transmembrane protein, at 563,564 to 564,934
Rv0473
Rv0474: Rv0474 - Probable transcriptional regulatory protein, at 565,021 to 565,443
Rv0474
Rv0475: Rv0475 - Iron-regulated heparin binding hemagglutinin HbhA (adhesin), at 565,797 to 566,396
Rv0475
Position (kb) 563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.670 kb on + strand at 562.671 kb on - strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.724 kb on + strand at 562.841 kb on + strand, within Rv0472c at 562.923 kb on - strand, within Rv0472c at 563.050 kb on - strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.102 kb on + strand, within Rv0472c at 563.103 kb on - strand, within Rv0472c at 563.244 kb on - strand, within Rv0472c at 563.278 kb on + strand, within Rv0472c at 563.415 kb on + strand at 563.415 kb on + strand at 563.464 kb on + strand at 563.534 kb on + strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.535 kb on - strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.575 kb on + strand at 563.848 kb on + strand, within Rv0473 at 564.036 kb on + strand, within Rv0473 at 564.036 kb on + strand, within Rv0473 at 564.260 kb on - strand, within Rv0473 at 564.410 kb on - strand, within Rv0473 at 564.540 kb on + strand, within Rv0473 at 564.540 kb on + strand, within Rv0473 at 564.541 kb on - strand, within Rv0473 at 564.756 kb on - strand, within Rv0473 at 564.908 kb on + strand at 564.908 kb on + strand at 564.975 kb on + strand at 564.976 kb on - strand at 564.976 kb on - strand at 565.009 kb on + strand at 565.009 kb on + strand at 565.015 kb on + strand at 565.015 kb on + strand at 565.016 kb on - strand at 565.016 kb on - strand at 565.198 kb on - strand, within Rv0474 at 565.261 kb on + strand, within Rv0474 at 565.262 kb on - strand, within Rv0474 at 565.262 kb on - strand, within Rv0474 at 565.326 kb on + strand, within Rv0474 at 565.365 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.369 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.380 kb on + strand, within Rv0474 at 565.381 kb on - strand, within Rv0474 at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.592 kb on + strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.593 kb on - strand at 565.621 kb on + strand at 565.621 kb on + strand at 565.622 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.704 kb on - strand at 565.754 kb on + strand at 565.754 kb on + strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.755 kb on - strand at 565.776 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.781 kb on - strand at 565.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 562,670 + -0.5 562,671 - -0.1 562,724 + +0.4 562,724 + +0.2 562,724 + -0.3 562,841 + Rv0472c 0.17 -2.7 562,923 - Rv0472c 0.28 -0.9 563,050 - Rv0472c 0.46 -1.4 563,102 + Rv0472c 0.54 -0.7 563,102 + Rv0472c 0.54 -0.6 563,103 - Rv0472c 0.54 -1.5 563,244 - Rv0472c 0.74 -1.1 563,278 + Rv0472c 0.79 -0.3 563,415 + -1.1 563,415 + -1.8 563,464 + +0.0 563,534 + -0.7 563,535 - +0.9 563,535 - -0.0 563,535 - -0.5 563,575 + -0.1 563,575 + -0.5 563,575 + +0.4 563,575 + +0.2 563,575 + -1.6 563,848 + Rv0473 0.21 -0.7 564,036 + Rv0473 0.34 -0.1 564,036 + Rv0473 0.34 -0.6 564,260 - Rv0473 0.51 -0.4 564,410 - Rv0473 0.62 -2.3 564,540 + Rv0473 0.71 -0.9 564,540 + Rv0473 0.71 +0.9 564,541 - Rv0473 0.71 -0.7 564,756 - Rv0473 0.87 -0.7 564,908 + -0.6 564,908 + +0.2 564,975 + +0.3 564,976 - -0.6 564,976 - -1.1 565,009 + -0.1 565,009 + -0.0 565,015 + +0.9 565,015 + -0.0 565,016 - +1.9 565,016 - -0.3 565,198 - Rv0474 0.42 +0.1 565,261 + Rv0474 0.57 +0.9 565,262 - Rv0474 0.57 -0.5 565,262 - Rv0474 0.57 -0.7 565,326 + Rv0474 0.72 +0.2 565,365 + Rv0474 0.81 +1.4 565,369 + Rv0474 0.82 -0.2 565,369 + Rv0474 0.82 -0.1 565,369 + Rv0474 0.82 -1.1 565,380 + Rv0474 0.85 +0.4 565,380 + Rv0474 0.85 -0.2 565,380 + Rv0474 0.85 +0.2 565,380 + Rv0474 0.85 -0.5 565,380 + Rv0474 0.85 -1.1 565,381 - Rv0474 0.85 -0.6 565,592 + +0.4 565,592 + -0.6 565,592 + -0.4 565,592 + +1.3 565,592 + -1.6 565,592 + +0.5 565,592 + -0.1 565,593 - -0.2 565,593 - +0.3 565,593 - -0.1 565,593 - +1.5 565,593 - -0.6 565,593 - -0.2 565,593 - -0.3 565,621 + -0.3 565,621 + +0.9 565,622 - -1.4 565,704 - -0.9 565,704 - -0.9 565,704 - +0.3 565,704 - -0.3 565,754 + +0.3 565,754 + -0.0 565,755 - -0.1 565,755 - -0.6 565,755 - -3.1 565,755 - -0.7 565,776 + +0.5 565,780 + +1.1 565,780 + -0.7 565,780 + -1.2 565,781 - -1.2 565,781 - -0.7
Or see this region's nucleotide sequence