Experiment: L-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0218 and Rv0219 are separated by 1 nucleotides Rv0219 and Rv0220 are separated by 9 nucleotides Rv0220 and Rv0221 are separated by 43 nucleotides
Rv0218: Rv0218 - Probable conserved transmembrane protein, at 260,924 to 262,252
Rv0218
Rv0219: Rv0219 - Probable conserved transmembrane protein, at 262,254 to 262,802
Rv0219
Rv0220: Rv0220 - Probable esterase LipC, at 262,812 to 264,023
Rv0220
Rv0221: Rv0221 - Possible triacylglycerol synthase (diacylglycerol acyltransferase), at 264,067 to 265,476
Rv0221
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.888 kb on + strand, within Rv0218 at 262.048 kb on + strand, within Rv0218 at 262.344 kb on + strand, within Rv0219 at 262.551 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.723 kb on - strand, within Rv0219 at 262.868 kb on - strand at 262.889 kb on + strand at 262.890 kb on - strand at 263.246 kb on - strand, within Rv0220 at 263.262 kb on - strand, within Rv0220 at 263.631 kb on + strand, within Rv0220 at 263.640 kb on + strand, within Rv0220 at 264.039 kb on - strand at 264.313 kb on + strand, within Rv0221 at 264.314 kb on - strand, within Rv0221 at 264.427 kb on + strand, within Rv0221 at 264.427 kb on + strand, within Rv0221 at 264.428 kb on - strand, within Rv0221 at 264.562 kb on + strand, within Rv0221 at 264.583 kb on - strand, within Rv0221 at 264.659 kb on - strand, within Rv0221 at 264.659 kb on - strand, within Rv0221 at 264.730 kb on - strand, within Rv0221 at 264.898 kb on + strand, within Rv0221 at 264.899 kb on - strand, within Rv0221
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate 10 mM (C) remove 261,888 + Rv0218 0.73 +1.3 262,048 + Rv0218 0.85 -0.1 262,344 + Rv0219 0.16 -1.0 262,551 + Rv0219 0.54 -0.9 262,632 + Rv0219 0.69 -0.2 262,632 + Rv0219 0.69 -0.4 262,632 + Rv0219 0.69 -0.0 262,723 - Rv0219 0.85 -1.6 262,868 - +0.4 262,889 + -0.2 262,890 - +0.1 263,246 - Rv0220 0.36 -0.4 263,262 - Rv0220 0.37 -1.8 263,631 + Rv0220 0.68 -0.7 263,640 + Rv0220 0.68 -0.3 264,039 - -1.4 264,313 + Rv0221 0.17 -0.1 264,314 - Rv0221 0.18 -0.1 264,427 + Rv0221 0.26 +2.5 264,427 + Rv0221 0.26 -0.3 264,428 - Rv0221 0.26 +0.1 264,562 + Rv0221 0.35 -0.1 264,583 - Rv0221 0.37 -0.1 264,659 - Rv0221 0.42 +0.4 264,659 - Rv0221 0.42 +0.9 264,730 - Rv0221 0.47 -0.2 264,898 + Rv0221 0.59 +0.2 264,899 - Rv0221 0.59 +0.2
Or see this region's nucleotide sequence