Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0043c and Rv0044c are separated by 132 nucleotides Rv0044c and Rv0045c are separated by 15 nucleotides Rv0045c and Rv0046c are separated by 81 nucleotides
Rv0043c: Rv0043c - Probable transcriptional regulatory protein (probably GntR-family), at 47,366 to 48,100
Rv0043c
Rv0044c: Rv0044c - Possible oxidoreductase, at 48,233 to 49,027
Rv0044c
Rv0045c: Rv0045c - Possible hydrolase, at 49,043 to 49,939
Rv0045c
Rv0046c: Rv0046c - myo-inositol-1-phosphate synthase Ino1 (inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (glucose 6-phosphate cyclase) (glucocycloaldolase), at 50,021 to 51,124
Rv0046c
Position (kb) 49
50 Strain fitness (log2 ratio) -2
-1
0
1 at 48.104 kb on + strand at 48.105 kb on - strand at 48.105 kb on - strand at 48.108 kb on + strand at 48.108 kb on + strand at 48.109 kb on - strand at 48.109 kb on - strand at 48.446 kb on + strand, within Rv0044c at 48.451 kb on - strand, within Rv0044c at 48.490 kb on - strand, within Rv0044c at 48.514 kb on + strand, within Rv0044c at 48.514 kb on + strand, within Rv0044c at 48.515 kb on - strand, within Rv0044c at 48.731 kb on - strand, within Rv0044c at 48.766 kb on - strand, within Rv0044c at 48.766 kb on - strand, within Rv0044c at 48.783 kb on - strand, within Rv0044c at 48.896 kb on - strand, within Rv0044c at 48.954 kb on + strand at 48.983 kb on + strand at 48.984 kb on - strand at 48.984 kb on - strand at 48.992 kb on - strand at 49.039 kb on - strand at 49.657 kb on - strand, within Rv0045c at 49.750 kb on + strand, within Rv0045c at 49.750 kb on + strand, within Rv0045c at 49.751 kb on - strand, within Rv0045c at 49.751 kb on - strand, within Rv0045c at 49.751 kb on - strand, within Rv0045c at 49.935 kb on - strand at 49.935 kb on - strand at 49.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 48,104 + -0.5 48,105 - -2.6 48,105 - +0.1 48,108 + +0.4 48,108 + +0.8 48,109 - -0.5 48,109 - -0.5 48,446 + Rv0044c 0.27 -0.0 48,451 - Rv0044c 0.27 -0.6 48,490 - Rv0044c 0.32 -0.0 48,514 + Rv0044c 0.35 -0.5 48,514 + Rv0044c 0.35 +1.7 48,515 - Rv0044c 0.35 +0.3 48,731 - Rv0044c 0.63 -0.0 48,766 - Rv0044c 0.67 -0.0 48,766 - Rv0044c 0.67 +0.0 48,783 - Rv0044c 0.69 +0.1 48,896 - Rv0044c 0.83 -0.2 48,954 + +0.7 48,983 + -2.1 48,984 - -0.4 48,984 - -0.3 48,992 - +0.1 49,039 - -0.3 49,657 - Rv0045c 0.68 -0.2 49,750 + Rv0045c 0.79 -0.0 49,750 + Rv0045c 0.79 +1.3 49,751 - Rv0045c 0.79 -0.3 49,751 - Rv0045c 0.79 -0.4 49,751 - Rv0045c 0.79 -0.3 49,935 - -0.3 49,935 - -0.1 49,973 + +0.1
Or see this region's nucleotide sequence