Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3598c and Rv3599c are separated by 11 nucleotides Rv3599c and Rv3600c are separated by 5 nucleotides Rv3600c and Rv3601c are separated by 2 nucleotides Rv3601c and Rv3602c overlap by 1 nucleotides
Rv3598c: Rv3598c - Lysyl-tRNA synthetase 1 LysS (lysine--tRNA ligase 1) (LysRS 1) (lysine translase), at 4,041,423 to 4,042,940
Rv3598c
Rv3599c: Rv3599c - Hypothetical short protein, at 4,042,952 to 4,043,035
Rv3599c
Rv3600c: Rv3600c - Conserved protein, at 4,043,041 to 4,043,859
Rv3600c
Rv3601c: Rv3601c - Probable aspartate 1-decarboxylase precursor PanD (aspartate alpha-decarboxylase), at 4,043,862 to 4,044,281
Rv3601c
Rv3602c: Rv3602c - Pantoate--beta-alanine ligase PanC (pantothenate synthetase) (pantoate activating enzyme), at 4,044,281 to 4,045,210
Rv3602c
Position (kb)
4043
4044 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4042.953 kb on + strand at 4042.953 kb on + strand at 4042.954 kb on - strand at 4043.242 kb on + strand, within Rv3600c at 4043.243 kb on - strand, within Rv3600c at 4043.243 kb on - strand, within Rv3600c at 4043.243 kb on - strand, within Rv3600c at 4043.437 kb on + strand, within Rv3600c at 4043.501 kb on + strand, within Rv3600c at 4043.619 kb on - strand, within Rv3600c
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 4,042,953 + +0.3 4,042,953 + -1.1 4,042,954 - +1.0 4,043,242 + Rv3600c 0.25 -2.9 4,043,243 - Rv3600c 0.25 -0.6 4,043,243 - Rv3600c 0.25 -0.7 4,043,243 - Rv3600c 0.25 -0.5 4,043,437 + Rv3600c 0.48 -0.9 4,043,501 + Rv3600c 0.56 +0.8 4,043,619 - Rv3600c 0.71 +0.0
Or see this region's nucleotide sequence