Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2977c

Experiment: D-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2976c and Rv2977c are separated by 32 nucleotidesRv2977c and Rv2978c overlap by 4 nucleotides Rv2976c: Rv2976c - Probable uracil-DNA glycosylase Ung (UDG), at 3,332,071 to 3,332,754 Rv2976c Rv2977c: Rv2977c - Probable thiamine-monophosphate kinase ThiL (thiamine-phosphate kinase), at 3,332,787 to 3,333,788 Rv2977c Rv2978c: Rv2978c - Probable transposase, at 3,333,785 to 3,335,164 Rv2978c Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -1 0 1at 3332.518 kb on - strand, within Rv2976cat 3332.631 kb on - strand, within Rv2976cat 3332.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C)
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3,332,518 - Rv2976c 0.65 +1.0
3,332,631 - Rv2976c 0.82 +1.1
3,332,770 + +0.3

Or see this region's nucleotide sequence