Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0747 and Rv0748 are separated by 90 nucleotides Rv0748 and Rv0749 are separated by 23 nucleotides Rv0749 and Rv0749A are separated by 80 nucleotides Rv0749A and Rv0750 are separated by 158 nucleotides
Rv0747: Rv0747 - PE-PGRS family protein PE_PGRS10, at 838,451 to 840,856
Rv0747
Rv0748: Rv0748 - Possible antitoxin VapB31, at 840,947 to 841,204
Rv0748
Rv0749: Rv0749 - Possible toxin VapC31. Contains PIN domain., at 841,228 to 841,656
Rv0749
Rv0749A: Rv0749A - Hypothetical protein (fragment), at 841,737 to 841,874
Rv0749A
Rv0750: Rv0750 - Conserved hypothetical protein, at 842,033 to 842,278
Rv0750
Position (kb) 840
841
842 Strain fitness (log2 ratio) -2
-1
0
1 at 840.283 kb on + strand, within Rv0747 at 840.854 kb on + strand at 840.979 kb on - strand, within Rv0748 at 840.979 kb on - strand, within Rv0748 at 841.150 kb on + strand, within Rv0748 at 841.202 kb on + strand at 841.202 kb on + strand at 841.212 kb on + strand at 841.213 kb on - strand at 841.544 kb on + strand, within Rv0749 at 841.568 kb on + strand, within Rv0749 at 841.568 kb on + strand, within Rv0749 at 841.672 kb on + strand at 841.738 kb on + strand at 841.739 kb on - strand at 841.996 kb on - strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.022 kb on - strand at 842.022 kb on - strand at 842.043 kb on + strand at 842.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 840,283 + Rv0747 0.76 -2.0 840,854 + -0.4 840,979 - Rv0748 0.12 -1.5 840,979 - Rv0748 0.12 +0.7 841,150 + Rv0748 0.79 -0.7 841,202 + -0.1 841,202 + -0.3 841,212 + -0.4 841,213 - -1.4 841,544 + Rv0749 0.74 -0.2 841,568 + Rv0749 0.79 +1.0 841,568 + Rv0749 0.79 -0.1 841,672 + -0.5 841,738 + +0.0 841,739 - +0.2 841,996 - -0.3 842,021 + -0.3 842,021 + +0.1 842,021 + +0.2 842,021 + -0.7 842,022 - -0.2 842,022 - +1.7 842,043 + -0.4 842,044 - -0.8
Or see this region's nucleotide sequence