Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0740 and Rv0741 are separated by 230 nucleotides Rv0741 and Rv0742 are separated by 132 nucleotides Rv0742 and Rv0743c are separated by 377 nucleotides Rv0743c and Rv0744c overlap by 4 nucleotides
Rv0740: Rv0740 - Conserved hypothetical protein, at 831,776 to 832,303
Rv0740
Rv0741: Rv0741 - Probable transposase (fragment), at 832,534 to 832,848
Rv0741
Rv0742: Rv0742 - PE-PGRS family protein PE_PGRS8, at 832,981 to 833,508
Rv0742
Rv0743c: Rv0743c - Hypothetical protein, at 833,886 to 834,443
Rv0743c
Rv0744c: Rv0744c - Possible transcriptional regulatory protein, at 834,440 to 834,946
Rv0744c
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 831.999 kb on - strand, within Rv0740 at 832.007 kb on - strand, within Rv0740 at 832.082 kb on + strand, within Rv0740 at 832.083 kb on - strand, within Rv0740 at 832.341 kb on + strand at 832.397 kb on + strand at 832.397 kb on + strand at 832.397 kb on + strand at 832.413 kb on + strand at 832.418 kb on + strand at 832.418 kb on + strand at 832.418 kb on + strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.683 kb on - strand, within Rv0741 at 832.683 kb on - strand, within Rv0741 at 832.683 kb on - strand, within Rv0741 at 832.847 kb on - strand at 832.950 kb on + strand at 832.983 kb on - strand at 833.200 kb on - strand, within Rv0742 at 833.239 kb on + strand, within Rv0742 at 833.239 kb on + strand, within Rv0742 at 833.240 kb on - strand, within Rv0742 at 833.532 kb on - strand at 833.614 kb on - strand at 833.738 kb on + strand at 833.738 kb on + strand at 833.738 kb on + strand at 833.887 kb on + strand at 833.887 kb on + strand at 833.887 kb on + strand at 833.888 kb on - strand at 833.888 kb on - strand at 833.888 kb on - strand at 833.911 kb on + strand at 833.912 kb on - strand at 833.912 kb on - strand at 833.912 kb on - strand at 833.912 kb on - strand at 833.914 kb on + strand at 833.914 kb on + strand at 833.915 kb on - strand at 833.915 kb on - strand at 833.915 kb on - strand at 834.182 kb on + strand, within Rv0743c at 834.182 kb on + strand, within Rv0743c at 834.182 kb on + strand, within Rv0743c at 834.183 kb on - strand, within Rv0743c at 834.183 kb on - strand, within Rv0743c at 834.183 kb on - strand, within Rv0743c at 834.186 kb on + strand, within Rv0743c at 834.186 kb on + strand, within Rv0743c at 834.186 kb on + strand, within Rv0743c at 834.187 kb on - strand, within Rv0743c at 834.187 kb on - strand, within Rv0743c at 834.187 kb on - strand, within Rv0743c at 834.187 kb on - strand, within Rv0743c at 834.199 kb on + strand, within Rv0743c at 834.327 kb on + strand, within Rv0743c at 834.328 kb on - strand, within Rv0743c at 834.373 kb on - strand, within Rv0743c
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 831,999 - Rv0740 0.42 -0.3 832,007 - Rv0740 0.44 -0.8 832,082 + Rv0740 0.58 +1.1 832,083 - Rv0740 0.58 -1.2 832,341 + +0.0 832,397 + +1.2 832,397 + -0.3 832,397 + +0.4 832,413 + -0.4 832,418 + -0.6 832,418 + +0.3 832,418 + +0.1 832,419 - +0.1 832,419 - -1.1 832,419 - -0.8 832,419 - -0.3 832,683 - Rv0741 0.47 -0.4 832,683 - Rv0741 0.47 +1.7 832,683 - Rv0741 0.47 -0.7 832,847 - -0.7 832,950 + -0.3 832,983 - -0.7 833,200 - Rv0742 0.41 -0.6 833,239 + Rv0742 0.49 -0.1 833,239 + Rv0742 0.49 +0.6 833,240 - Rv0742 0.49 -2.8 833,532 - -0.5 833,614 - -0.4 833,738 + -0.1 833,738 + -0.4 833,738 + -0.4 833,887 + -0.2 833,887 + +0.8 833,887 + -0.5 833,888 - -0.7 833,888 - -0.9 833,888 - +1.7 833,911 + -0.4 833,912 - +0.7 833,912 - -2.0 833,912 - +0.2 833,912 - +0.1 833,914 + -1.3 833,914 + -0.9 833,915 - -0.6 833,915 - +0.0 833,915 - -0.3 834,182 + Rv0743c 0.53 -0.5 834,182 + Rv0743c 0.53 +0.1 834,182 + Rv0743c 0.53 -0.5 834,183 - Rv0743c 0.53 -0.5 834,183 - Rv0743c 0.53 +1.7 834,183 - Rv0743c 0.53 +1.7 834,186 + Rv0743c 0.54 +1.2 834,186 + Rv0743c 0.54 -1.1 834,186 + Rv0743c 0.54 +0.4 834,187 - Rv0743c 0.54 -0.7 834,187 - Rv0743c 0.54 +0.1 834,187 - Rv0743c 0.54 -1.6 834,187 - Rv0743c 0.54 +0.1 834,199 + Rv0743c 0.56 +0.9 834,327 + Rv0743c 0.79 -0.2 834,328 - Rv0743c 0.79 -0.3 834,373 - Rv0743c 0.87 -0.1
Or see this region's nucleotide sequence