Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0696

Experiment: D-Lactate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0694 and Rv0695 are separated by 189 nucleotidesRv0695 and Rv0696 are separated by 48 nucleotidesRv0696 and Rv0697 are separated by 1 nucleotides Rv0694: Rv0694 - Possible L-lactate dehydrogenase (cytochrome) LldD1, at 793,335 to 794,525 Rv0694 Rv0695: Rv0695 - Conserved hypothetical protein, at 794,715 to 795,470 Rv0695 Rv0696: Rv0696 - Probable membrane sugar transferase, at 795,519 to 796,931 Rv0696 Rv0697: Rv0697 - Probable dehydrogenase, at 796,933 to 798,372 Rv0697 Position (kb) 795 796 797Strain fitness (log2 ratio) -1 0 1at 794.696 kb on - strandat 794.783 kb on - strandat 794.852 kb on - strand, within Rv0695at 794.852 kb on - strand, within Rv0695at 795.130 kb on + strand, within Rv0695at 795.782 kb on - strand, within Rv0696at 796.191 kb on - strand, within Rv0696

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C)
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794,696 - +0.8
794,783 - -0.4
794,852 - Rv0695 0.18 +0.1
794,852 - Rv0695 0.18 -0.2
795,130 + Rv0695 0.55 +0.0
795,782 - Rv0696 0.19 -1.0
796,191 - Rv0696 0.48 -0.7

Or see this region's nucleotide sequence