Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0669c and Rv0670 are separated by 194 nucleotides Rv0670 and Rv0671 are separated by 31 nucleotides Rv0671 and Rv0672 are separated by 59 nucleotides
Rv0669c: Rv0669c - Possible hydrolase, at 767,684 to 769,597
Rv0669c
Rv0670: Rv0670 - Probable endonuclease IV End (endodeoxyribonuclease IV) (apurinase), at 769,792 to 770,550
Rv0670
Rv0671: Rv0671 - Possible conserved lipoprotein LpqP, at 770,582 to 771,424
Rv0671
Rv0672: Rv0672 - Probable acyl-CoA dehydrogenase FadE8, at 771,484 to 773,112
Rv0672
Position (kb) 770
771
772 Strain fitness (log2 ratio) -1
0
1
2 at 769.586 kb on + strand at 769.586 kb on + strand at 769.664 kb on - strand at 769.706 kb on - strand at 769.781 kb on - strand at 769.860 kb on - strand at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.951 kb on + strand, within Rv0670 at 769.952 kb on - strand, within Rv0670 at 769.952 kb on - strand, within Rv0670 at 770.171 kb on - strand, within Rv0670 at 770.341 kb on - strand, within Rv0670 at 770.570 kb on + strand at 770.571 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.582 kb on - strand at 770.601 kb on + strand at 770.727 kb on - strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.728 kb on + strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.729 kb on - strand, within Rv0671 at 770.813 kb on + strand, within Rv0671 at 771.005 kb on + strand, within Rv0671 at 771.492 kb on + strand at 771.493 kb on - strand at 771.532 kb on + strand at 771.533 kb on - strand at 771.533 kb on - strand at 771.533 kb on - strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.605 kb on + strand at 771.727 kb on + strand, within Rv0672 at 771.864 kb on + strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.865 kb on - strand, within Rv0672 at 771.886 kb on + strand, within Rv0672 at 771.887 kb on - strand, within Rv0672 at 771.912 kb on + strand, within Rv0672 at 771.912 kb on + strand, within Rv0672 at 771.913 kb on - strand, within Rv0672 at 772.091 kb on - strand, within Rv0672
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 769,586 + -0.2 769,586 + -0.2 769,664 - -0.6 769,706 - -0.5 769,781 - +0.3 769,860 - -0.3 769,951 + Rv0670 0.21 +0.7 769,951 + Rv0670 0.21 -0.0 769,951 + Rv0670 0.21 +1.2 769,951 + Rv0670 0.21 +0.0 769,952 - Rv0670 0.21 +0.1 769,952 - Rv0670 0.21 -0.2 770,171 - Rv0670 0.50 -0.0 770,341 - Rv0670 0.72 -0.4 770,570 + -0.1 770,571 - +0.1 770,582 - -0.1 770,582 - -0.1 770,582 - +0.3 770,582 - +0.8 770,601 + +2.2 770,727 - Rv0671 0.17 -0.5 770,728 + Rv0671 0.17 -1.2 770,728 + Rv0671 0.17 +0.1 770,729 - Rv0671 0.17 +0.4 770,729 - Rv0671 0.17 -0.2 770,729 - Rv0671 0.17 -1.3 770,813 + Rv0671 0.27 -1.2 771,005 + Rv0671 0.50 +2.3 771,492 + -0.7 771,493 - +0.2 771,532 + -0.7 771,533 - -0.6 771,533 - -0.1 771,533 - -0.3 771,605 + -0.5 771,605 + -1.2 771,605 + -0.4 771,605 + +0.0 771,727 + Rv0672 0.15 -0.1 771,864 + Rv0672 0.23 -0.6 771,865 - Rv0672 0.23 -0.9 771,865 - Rv0672 0.23 -0.4 771,865 - Rv0672 0.23 -0.4 771,886 + Rv0672 0.25 -0.9 771,887 - Rv0672 0.25 -0.3 771,912 + Rv0672 0.26 +0.4 771,912 + Rv0672 0.26 +0.9 771,913 - Rv0672 0.26 -0.1 772,091 - Rv0672 0.37 -0.5
Or see this region's nucleotide sequence