Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0517 and Rv0518 are separated by 131 nucleotides Rv0518 and Rv0519c are separated by 288 nucleotides
Rv0517: Rv0517 - Possible membrane acyltransferase, at 608,746 to 610,056
Rv0517
Rv0518: Rv0518 - Possible exported protein, at 610,188 to 610,883
Rv0518
Rv0519c: Rv0519c - Possible conserved membrane protein, at 611,172 to 612,074
Rv0519c
Position (kb) 610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.214 kb on + strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.215 kb on - strand, within Rv0517 at 609.316 kb on + strand, within Rv0517 at 609.317 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.449 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.451 kb on - strand, within Rv0517 at 609.604 kb on + strand, within Rv0517 at 609.769 kb on + strand, within Rv0517 at 609.770 kb on - strand, within Rv0517 at 609.792 kb on + strand, within Rv0517 at 609.793 kb on - strand, within Rv0517 at 609.820 kb on + strand, within Rv0517 at 609.904 kb on + strand, within Rv0517 at 609.995 kb on + strand at 610.109 kb on - strand at 610.109 kb on - strand at 610.121 kb on - strand at 610.121 kb on - strand at 610.202 kb on + strand at 610.203 kb on - strand at 610.206 kb on + strand at 610.206 kb on + strand at 610.206 kb on + strand at 610.206 kb on + strand at 610.206 kb on + strand at 610.206 kb on + strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.207 kb on - strand at 610.326 kb on + strand, within Rv0518 at 610.327 kb on - strand, within Rv0518 at 610.328 kb on + strand, within Rv0518 at 610.328 kb on + strand, within Rv0518 at 610.668 kb on - strand, within Rv0518 at 610.678 kb on + strand, within Rv0518 at 610.679 kb on - strand, within Rv0518 at 610.833 kb on + strand at 610.834 kb on - strand at 610.936 kb on + strand at 610.937 kb on - strand at 610.937 kb on - strand at 610.957 kb on + strand at 611.081 kb on - strand at 611.173 kb on + strand at 611.174 kb on - strand at 611.174 kb on - strand at 611.300 kb on - strand, within Rv0519c at 611.380 kb on + strand, within Rv0519c at 611.381 kb on - strand, within Rv0519c at 611.507 kb on - strand, within Rv0519c at 611.553 kb on - strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.633 kb on - strand, within Rv0519c
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 609,214 + Rv0517 0.36 +0.0 609,214 + Rv0517 0.36 -0.5 609,214 + Rv0517 0.36 +1.7 609,215 - Rv0517 0.36 -0.2 609,215 - Rv0517 0.36 -0.3 609,215 - Rv0517 0.36 +0.5 609,316 + Rv0517 0.43 -0.0 609,317 - Rv0517 0.44 -0.2 609,449 - Rv0517 0.54 -0.6 609,449 - Rv0517 0.54 -0.2 609,449 - Rv0517 0.54 -1.0 609,449 - Rv0517 0.54 -0.5 609,451 - Rv0517 0.54 -0.6 609,451 - Rv0517 0.54 +0.2 609,451 - Rv0517 0.54 +0.1 609,451 - Rv0517 0.54 -0.3 609,604 + Rv0517 0.65 +0.4 609,769 + Rv0517 0.78 -0.0 609,770 - Rv0517 0.78 -0.3 609,792 + Rv0517 0.80 +0.4 609,793 - Rv0517 0.80 -0.0 609,820 + Rv0517 0.82 +0.5 609,904 + Rv0517 0.88 -0.0 609,995 + -0.7 610,109 - -0.3 610,109 - +0.2 610,121 - +0.2 610,121 - -0.3 610,202 + +0.4 610,203 - -0.5 610,206 + -0.5 610,206 + -0.7 610,206 + +2.1 610,206 + +0.0 610,206 + +0.4 610,206 + +0.1 610,207 - +0.4 610,207 - -0.2 610,207 - -0.4 610,207 - -0.6 610,207 - -0.8 610,207 - +0.5 610,207 - -1.4 610,207 - -0.3 610,207 - -0.3 610,326 + Rv0518 0.20 -0.1 610,327 - Rv0518 0.20 -1.1 610,328 + Rv0518 0.20 -0.6 610,328 + Rv0518 0.20 -0.8 610,668 - Rv0518 0.69 -1.0 610,678 + Rv0518 0.70 -1.2 610,679 - Rv0518 0.71 +0.1 610,833 + -0.4 610,834 - -0.8 610,936 + -0.1 610,937 - -0.3 610,937 - -0.5 610,957 + +0.6 611,081 - +0.5 611,173 + -0.3 611,174 - -3.0 611,174 - -0.6 611,300 - Rv0519c 0.14 +0.0 611,380 + Rv0519c 0.23 +0.7 611,381 - Rv0519c 0.23 +1.0 611,507 - Rv0519c 0.37 -0.1 611,553 - Rv0519c 0.42 +0.1 611,632 + Rv0519c 0.51 +0.0 611,632 + Rv0519c 0.51 +0.7 611,633 - Rv0519c 0.51 +0.4
Or see this region's nucleotide sequence