Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0389 and Rv0390 overlap by 4 nucleotides Rv0390 and Rv0391 overlap by 4 nucleotides Rv0391 and Rv0392c overlap by 4 nucleotides
Rv0389: Rv0389 - Probable phosphoribosylglycinamide formyltransferase 2 PurT (GART 2) (gar transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (formate-dependent gar transformylase), at 468,335 to 469,594
Rv0389
Rv0390: Rv0390 - Conserved protein, at 469,591 to 470,013
Rv0390
Rv0391: Rv0391 - Probable O-succinylhomoserine sulfhydrylase MetZ (OSH sulfhydrylase), at 470,010 to 471,230
Rv0391
Rv0392c: Rv0392c - Probable membrane NADH dehydrogenase NdhA, at 471,227 to 472,639
Rv0392c
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.069 kb on + strand, within Rv0389 at 469.070 kb on - strand, within Rv0389 at 469.070 kb on - strand, within Rv0389 at 469.235 kb on + strand, within Rv0389 at 469.235 kb on + strand, within Rv0389 at 469.235 kb on + strand, within Rv0389 at 469.236 kb on - strand, within Rv0389 at 469.597 kb on + strand at 469.598 kb on - strand at 469.608 kb on + strand at 469.738 kb on + strand, within Rv0390 at 469.738 kb on + strand, within Rv0390 at 469.738 kb on + strand, within Rv0390 at 469.738 kb on + strand, within Rv0390 at 469.839 kb on + strand, within Rv0390 at 469.916 kb on - strand, within Rv0390 at 469.916 kb on - strand, within Rv0390 at 470.130 kb on + strand at 470.146 kb on - strand, within Rv0391 at 470.152 kb on - strand, within Rv0391 at 470.202 kb on + strand, within Rv0391 at 470.202 kb on + strand, within Rv0391 at 470.203 kb on - strand, within Rv0391 at 470.208 kb on + strand, within Rv0391 at 470.208 kb on + strand, within Rv0391 at 470.721 kb on + strand, within Rv0391 at 470.929 kb on - strand, within Rv0391 at 471.228 kb on + strand at 471.325 kb on - strand at 472.037 kb on - strand, within Rv0392c
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 469,069 + Rv0389 0.58 +0.4 469,070 - Rv0389 0.58 -0.4 469,070 - Rv0389 0.58 -0.2 469,235 + Rv0389 0.71 +1.7 469,235 + Rv0389 0.71 -0.4 469,235 + Rv0389 0.71 -0.5 469,236 - Rv0389 0.72 +0.4 469,597 + -1.1 469,598 - -1.8 469,608 + +0.3 469,738 + Rv0390 0.35 -0.6 469,738 + Rv0390 0.35 -0.2 469,738 + Rv0390 0.35 -0.5 469,738 + Rv0390 0.35 -1.3 469,839 + Rv0390 0.59 -0.8 469,916 - Rv0390 0.77 -0.2 469,916 - Rv0390 0.77 -1.0 470,130 + -1.6 470,146 - Rv0391 0.11 -1.3 470,152 - Rv0391 0.12 +1.7 470,202 + Rv0391 0.16 -0.5 470,202 + Rv0391 0.16 -0.6 470,203 - Rv0391 0.16 -1.0 470,208 + Rv0391 0.16 -0.6 470,208 + Rv0391 0.16 -1.3 470,721 + Rv0391 0.58 -0.8 470,929 - Rv0391 0.75 -0.5 471,228 + +0.3 471,325 - -1.3 472,037 - Rv0392c 0.57 +0.2
Or see this region's nucleotide sequence