Experiment: D-Lactate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0137c and Rv0138 are separated by 62 nucleotides Rv0138 and Rv0139 are separated by 0 nucleotides Rv0139 and Rv0140 are separated by 60 nucleotides Rv0140 and Rv0141c overlap by 20 nucleotides Rv0141c and Rv0142 are separated by 29 nucleotides
Rv0137c: Rv0137c - Probable peptide methionine sulfoxide reductase MsrA (protein-methionine-S-oxide reductase) (peptide met(O) reductase), at 164,712 to 165,260
Rv0137c
Rv0138: Rv0138 - Conserved hypothetical protein, at 165,323 to 165,826
Rv0138
Rv0139: Rv0139 - Possible oxidoreductase, at 165,827 to 166,849
Rv0139
Rv0140: Rv0140 - Conserved protein, at 166,910 to 167,290
Rv0140
Rv0141c: Rv0141c - Unknown protein, at 167,271 to 167,681
Rv0141c
Rv0142: Rv0142 - Conserved hypothetical protein, at 167,711 to 168,637
Rv0142
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 164.831 kb on - strand, within Rv0137c at 164.968 kb on + strand, within Rv0137c at 164.969 kb on - strand, within Rv0137c at 165.005 kb on + strand, within Rv0137c at 165.006 kb on - strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.130 kb on + strand, within Rv0137c at 165.160 kb on + strand, within Rv0137c at 165.161 kb on - strand, within Rv0137c at 165.282 kb on + strand at 165.283 kb on - strand at 165.283 kb on - strand at 165.283 kb on - strand at 165.303 kb on - strand at 165.303 kb on - strand at 165.434 kb on + strand, within Rv0138 at 165.434 kb on + strand, within Rv0138 at 165.435 kb on - strand, within Rv0138 at 165.435 kb on - strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.674 kb on + strand, within Rv0138 at 165.675 kb on - strand, within Rv0138 at 165.675 kb on - strand, within Rv0138 at 165.675 kb on - strand, within Rv0138 at 165.713 kb on + strand, within Rv0138 at 165.713 kb on + strand, within Rv0138 at 165.713 kb on + strand, within Rv0138 at 165.713 kb on + strand, within Rv0138 at 165.713 kb on + strand, within Rv0138 at 165.714 kb on - strand, within Rv0138 at 165.714 kb on - strand, within Rv0138 at 165.714 kb on - strand, within Rv0138 at 165.824 kb on + strand at 165.824 kb on + strand at 165.824 kb on + strand at 165.924 kb on + strand at 165.925 kb on - strand at 166.049 kb on + strand, within Rv0139 at 166.049 kb on + strand, within Rv0139 at 166.049 kb on + strand, within Rv0139 at 166.049 kb on + strand, within Rv0139 at 166.050 kb on - strand, within Rv0139 at 166.050 kb on - strand, within Rv0139 at 166.050 kb on - strand, within Rv0139 at 166.050 kb on - strand, within Rv0139 at 166.050 kb on - strand, within Rv0139 at 166.053 kb on - strand, within Rv0139 at 166.184 kb on + strand, within Rv0139 at 166.259 kb on + strand, within Rv0139 at 166.259 kb on + strand, within Rv0139 at 166.259 kb on + strand, within Rv0139 at 166.260 kb on - strand, within Rv0139 at 166.260 kb on - strand, within Rv0139 at 166.302 kb on - strand, within Rv0139 at 166.352 kb on + strand, within Rv0139 at 166.353 kb on - strand, within Rv0139 at 166.520 kb on + strand, within Rv0139 at 166.520 kb on + strand, within Rv0139 at 166.521 kb on - strand, within Rv0139 at 166.521 kb on - strand, within Rv0139 at 166.521 kb on - strand, within Rv0139 at 166.676 kb on - strand, within Rv0139 at 166.863 kb on - strand at 166.986 kb on + strand, within Rv0140 at 167.065 kb on + strand, within Rv0140 at 167.085 kb on + strand, within Rv0140 at 167.120 kb on + strand, within Rv0140 at 167.121 kb on - strand, within Rv0140 at 167.148 kb on - strand, within Rv0140 at 167.148 kb on - strand, within Rv0140 at 167.150 kb on + strand, within Rv0140 at 167.201 kb on + strand, within Rv0140 at 167.202 kb on - strand, within Rv0140 at 167.308 kb on - strand at 167.308 kb on - strand at 167.335 kb on + strand, within Rv0141c at 167.398 kb on + strand, within Rv0141c at 167.570 kb on - strand, within Rv0141c at 167.839 kb on + strand, within Rv0142 at 167.839 kb on + strand, within Rv0142 at 167.840 kb on - strand, within Rv0142 at 167.840 kb on - strand, within Rv0142
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate 10 mM (C) remove 164,831 - Rv0137c 0.22 +1.3 164,968 + Rv0137c 0.47 -0.3 164,969 - Rv0137c 0.47 -0.3 165,005 + Rv0137c 0.53 +1.3 165,006 - Rv0137c 0.54 -0.3 165,130 + Rv0137c 0.76 -0.3 165,130 + Rv0137c 0.76 -1.1 165,130 + Rv0137c 0.76 +0.2 165,160 + Rv0137c 0.82 -1.1 165,161 - Rv0137c 0.82 -0.1 165,282 + -0.6 165,283 - +1.0 165,283 - -0.2 165,283 - -0.1 165,303 - -0.4 165,303 - -0.1 165,434 + Rv0138 0.22 +1.4 165,434 + Rv0138 0.22 -1.1 165,435 - Rv0138 0.22 +0.3 165,435 - Rv0138 0.22 -0.7 165,674 + Rv0138 0.70 -0.1 165,674 + Rv0138 0.70 -0.4 165,674 + Rv0138 0.70 +0.8 165,674 + Rv0138 0.70 +0.0 165,674 + Rv0138 0.70 -0.2 165,675 - Rv0138 0.70 +3.7 165,675 - Rv0138 0.70 +0.4 165,675 - Rv0138 0.70 +0.6 165,713 + Rv0138 0.77 +0.8 165,713 + Rv0138 0.77 -0.5 165,713 + Rv0138 0.77 -0.3 165,713 + Rv0138 0.77 +0.6 165,713 + Rv0138 0.77 -0.4 165,714 - Rv0138 0.78 -0.8 165,714 - Rv0138 0.78 +0.1 165,714 - Rv0138 0.78 -0.0 165,824 + +0.8 165,824 + +0.4 165,824 + +0.5 165,924 + -0.3 165,925 - +0.0 166,049 + Rv0139 0.22 -0.3 166,049 + Rv0139 0.22 +0.1 166,049 + Rv0139 0.22 -1.4 166,049 + Rv0139 0.22 -0.3 166,050 - Rv0139 0.22 -0.3 166,050 - Rv0139 0.22 -0.1 166,050 - Rv0139 0.22 -0.6 166,050 - Rv0139 0.22 +1.0 166,050 - Rv0139 0.22 -0.2 166,053 - Rv0139 0.22 +0.7 166,184 + Rv0139 0.35 -0.6 166,259 + Rv0139 0.42 -0.2 166,259 + Rv0139 0.42 -0.7 166,259 + Rv0139 0.42 -0.4 166,260 - Rv0139 0.42 -0.3 166,260 - Rv0139 0.42 -0.8 166,302 - Rv0139 0.46 -0.3 166,352 + Rv0139 0.51 -0.0 166,353 - Rv0139 0.51 -0.0 166,520 + Rv0139 0.68 -0.7 166,520 + Rv0139 0.68 -0.9 166,521 - Rv0139 0.68 +0.5 166,521 - Rv0139 0.68 -0.3 166,521 - Rv0139 0.68 -0.5 166,676 - Rv0139 0.83 -0.7 166,863 - -1.1 166,986 + Rv0140 0.20 +0.6 167,065 + Rv0140 0.41 +0.7 167,085 + Rv0140 0.46 -1.3 167,120 + Rv0140 0.55 -0.7 167,121 - Rv0140 0.55 -0.2 167,148 - Rv0140 0.62 -0.3 167,148 - Rv0140 0.62 -0.3 167,150 + Rv0140 0.63 +0.1 167,201 + Rv0140 0.76 -2.1 167,202 - Rv0140 0.77 -0.0 167,308 - +0.2 167,308 - -0.8 167,335 + Rv0141c 0.16 +0.0 167,398 + Rv0141c 0.31 -0.0 167,570 - Rv0141c 0.73 -1.4 167,839 + Rv0142 0.14 +0.1 167,839 + Rv0142 0.14 +0.4 167,840 - Rv0142 0.14 -0.2 167,840 - Rv0142 0.14 -0.5
Or see this region's nucleotide sequence